Gene name: PEX2
Reference locus (S288C): YJL210W
Gene biotype: protein_coding
Description: Peroxisomal biogenesis factor 2; RING-finger peroxin and E3 ubiquitin ligase; peroxisomal membrane protein with a C-terminal zinc-binding RING domain, forms translocation subcomplex with Pex10p and Pex12p which functions in peroxisomal matrix protein import
Top 10 interactors (score): PEX14 (0.999); PEX10 (0.999); PEX12 (0.999); PEX13 (0.999); PEX5 (0.998); PEX19 (0.997); PEX11 (0.995); PEX8 (0.995); PEX17 (0.993); PEX6 (0.99); PEX3 (0.987); PEX7 (0.983); PEX4 (0.976); PEX1 (0.974); DYN2 (0.9); DCI1 (0.857); PRE7 (0.85); PEX15 (0.821); UBC4 (0.82); PEX18 (0.82)
Homologues (species, bitscore): pex2 (Danio rerio, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:25321-26136:+ | gene-YJL210W_AKU4011 | rna-NM_001181643.1_AKU4011 | cds-NP_012325.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:2589-3404:+ | gene-YJL210W_BG1 | rna-NM_001181643.1_BG1 | cds-NP_012325.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:37122-37937:+ | gene-YJL210W_Bruggeman | rna-NM_001181643.1_Bruggeman | cds-NP_012325.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:39868-40683:+ | gene-YJL210W_CAT1 | rna-NM_001181643.1_CAT1 | cds-NP_012325.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:30951-31766:+ | gene-YJL210W_CBS1585 | rna-NM_001181643.1_CBS1585 | cds-NP_012325.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:55691-56506:+ | gene-YJL210W_CBS436 | rna-NM_001181643.1_CBS436 | cds-NP_012325.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:27434-28249:+ | gene-YJL210W_CBS6412 | rna-NM_001181643.1_CBS6412 | cds-NP_012325.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:28430-29245:+ | gene-YJL210W_CBS6413 | rna-NM_001181643.1_CBS6413 | cds-NP_012325.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:19383-20198:+ | gene-YJL210W_CENPK1137D | rna-NM_001181643.1_CENPK1137D | cds-NP_012325.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:29616-30431:+ | gene-YJL210W_EthanolRed | rna-NM_001181643.1_EthanolRed | cds-NP_012325.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:34894-35709:+ | gene-YJL210W_FaliES1 | rna-NM_001181643.1_FaliES1 | cds-NP_012325.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000301.1:26044-26859:+ | gene-YJL210W_JAY291 | rna-NM_001181643.1_JAY291 | cds-NP_012325.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:38855-39670:+ | gene-YJL210W_MUCL30387 | rna-NM_001181643.1_MUCL30387 | cds-NP_012325.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:35010-35825:+ | gene-YJL210W_MUCL30388 | rna-NM_001181643.1_MUCL30388 | cds-NP_012325.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:29690-30505:+ | gene-YJL210W_MUCL39482 | rna-NM_001181643.1_MUCL39482 | cds-NP_012325.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:34296-35111:+ | gene-YJL210W_MUCL42920 | rna-NM_001181643.1_MUCL42920 | cds-NP_012325.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:36898-37713:+ | gene-YJL210W_NCIM3186 | rna-NM_001181643.1_NCIM3186 | cds-NP_012325.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:28307-29122:+ | gene-YJL210W_NCYC1407 | rna-NM_001181643.1_NCYC1407 | cds-NP_012325.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:40991-41806:+ | gene-YJL210W_PE2H3 | rna-NM_001181643.1_PE2H3 | cds-NP_012325.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:34878-35693:+ | gene-YJL210W_PE2H4 | rna-NM_001181643.1_PE2H4 | cds-NP_012325.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:36919-37734:+ | gene-YJL210W_S288C | rna-NM_001181643.1_S288C | cds-NP_012325.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:116158-116973:- | gene-YJL210W_SA1 | rna-NM_001181643.1_SA1 | cds-NP_012325.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:28090-28905:+ | gene-YJL210W_ThermosaccDry | rna-NM_001181643.1_ThermosaccDry | cds-NP_012325.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:34947-35762:+ | gene-YJL210W_VR1 | rna-NM_001181643.1_VR1 | cds-NP_012325.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:15673-16488:+ | gene-YJL210W_ZTW1 | rna-NM_001181643.1_ZTW1 | cds-NP_012325.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:39837-40652:+ | gene-YJL210W_Sparadoxus | rna-NM_001181643.1_Sparadoxus | cds-NP_012325.1_Sparadoxus | 86.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |