Gene name: PEX12
Reference locus (S288C): YMR026C
Gene biotype: protein_coding
Description: Peroxisome assembly protein 12; C3HC4-type RING-finger peroxin and E3 ubiquitin ligase; required for peroxisome biogenesis and peroxisomal matrix protein import; forms translocation subcomplex with Pex2p and Pex10p; mutations in human homolog cause peroxisomal disorder; Belongs to the pex2/pex10/pex12 family
Top 10 interactors (score): PEX19 (0.999); PEX10 (0.999); PEX14 (0.999); PEX2 (0.999); PEX11 (0.999); PEX5 (0.999); PEX3 (0.999); PEX13 (0.999); PEX4 (0.998); PEX8 (0.997); PEX6 (0.996); PEX7 (0.995); PEX1 (0.994); PEX17 (0.993); PXA1 (0.974); FIS1 (0.961); PXA2 (0.959); UBC4 (0.935); PRE7 (0.924); MSP1 (0.914)
Homologues (species, bitscore): PEX12 (Homo sapiens, 90.9); Pex12 (Mus musculus, 88.6); pex12 (Danio rerio, 84.7); pex12 (Xenopus tropicalis, 69.3); Pex12 (Drosophila melanogaster, 52.0); prx-12 (Caenorhabditis elegans, 70.1); PEX12 (Arabidopsis thaliana, 70.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:373833-375032:- | gene-YMR026C_AKU4011 | rna-NM_001182522.1_AKU4011 | cds-NP_013739.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:167821-169020:+ | gene-YMR026C_BG1 | rna-NM_001182522.1_BG1 | cds-NP_013739.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:313774-314973:- | gene-YMR026C_Bruggeman | rna-NM_001182522.1_Bruggeman | cds-NP_013739.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:316286-317485:- | gene-YMR026C_CAT1 | rna-NM_001182522.1_CAT1 | cds-NP_013739.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:306772-307971:- | gene-YMR026C_CBS1585 | rna-NM_001182522.1_CBS1585 | cds-NP_013739.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:312325-313524:- | gene-YMR026C_CBS436 | rna-NM_001182522.1_CBS436 | cds-NP_013739.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:420176-421375:- | gene-YMR026C_CBS6412 | rna-NM_001182522.1_CBS6412 | cds-NP_013739.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:306030-307229:- | gene-YMR026C_CBS6413 | rna-NM_001182522.1_CBS6413 | cds-NP_013739.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:318965-320164:- | gene-YMR026C_CENPK1137D | rna-NM_001182522.1_CENPK1137D | cds-NP_013739.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:306605-307804:- | gene-YMR026C_EthanolRed | rna-NM_001182522.1_EthanolRed | cds-NP_013739.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:309788-310987:- | gene-YMR026C_FaliES1 | rna-NM_001182522.1_FaliES1 | cds-NP_013739.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:125952-127151:+ | gene-YMR026C_JAY291 | rna-NM_001182522.1_JAY291 | cds-NP_013739.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:311733-312932:- | gene-YMR026C_MUCL30387 | rna-NM_001182522.1_MUCL30387 | cds-NP_013739.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:316157-317356:- | gene-YMR026C_MUCL30388 | rna-NM_001182522.1_MUCL30388 | cds-NP_013739.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:307057-308256:- | gene-YMR026C_MUCL39482 | rna-NM_001182522.1_MUCL39482 | cds-NP_013739.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:312875-314074:- | gene-YMR026C_MUCL42920 | rna-NM_001182522.1_MUCL42920 | cds-NP_013739.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:324190-325389:- | gene-YMR026C_NCIM3186 | rna-NM_001182522.1_NCIM3186 | cds-NP_013739.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:306974-308173:- | gene-YMR026C_NCYC1407 | rna-NM_001182522.1_NCYC1407 | cds-NP_013739.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:312921-314120:- | gene-YMR026C_PE2H3 | rna-NM_001182522.1_PE2H3 | cds-NP_013739.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:319016-320215:- | gene-YMR026C_PE2H4 | rna-NM_001182522.1_PE2H4 | cds-NP_013739.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:324236-325435:- | gene-YMR026C_S288C | rna-NM_001182522.1_S288C | cds-NP_013739.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:212829-214028:+ | gene-YMR026C_SA1 | rna-NM_001182522.1_SA1 | cds-NP_013739.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:306857-308056:- | gene-YMR026C_ThermosaccDry | rna-NM_001182522.1_ThermosaccDry | cds-NP_013739.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:311556-312755:- | gene-YMR026C_VR1 | rna-NM_001182522.1_VR1 | cds-NP_013739.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:285872-287071:- | gene-YMR026C_ZTW1 | rna-NM_001182522.1_ZTW1 | cds-NP_013739.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:319799-320998:- | gene-YMR026C_Sparadoxus | rna-NM_001182522.1_Sparadoxus | cds-NP_013739.1_Sparadoxus | 86.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |