Gene name: PEX10
Reference locus (S288C): YDR265W
Gene biotype: protein_coding
Description: Peroxisome biogenesis factor 10; Peroxisomal membrane E3 ubiquitin ligase; required for for Ubc4p-dependent Pex5p ubiquitination and peroxisomal matrix protein import; contains zinc-binding RING domain; mutations in human homolog cause various peroxisomal disorders
Top 10 interactors (score): PEX12 (0.999); PEX13 (0.999); PEX19 (0.999); PEX14 (0.999); PEX11 (0.999); PEX2 (0.999); PEX5 (0.999); PEX7 (0.998); PEX4 (0.996); PEX6 (0.996); PEX8 (0.996); PEX17 (0.993); PEX3 (0.983); PEX1 (0.982); UBC4 (0.958); PEX15 (0.923); PEX22 (0.917); PRE7 (0.912); ATG8 (0.909); DYN2 (0.904)
Homologues (species, bitscore): PEX10 (Homo sapiens, 95.9); Pex10 (Mus musculus, 102.1); pex10 (Danio rerio, 121.7); pex10 (Xenopus tropicalis, 117.5); Pex10 (Drosophila melanogaster, 118.2); PEX10 (Arabidopsis thaliana, 132.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:951157-952170:+ | gene-YDR265W_AKU4011 | rna-NM_001180573.1_AKU4011 | cds-NP_010551.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:180158-181171:- | gene-YDR265W_BG1 | rna-NM_001180573.1_BG1 | cds-NP_010551.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:977330-978343:+ | gene-YDR265W_Bruggeman | rna-NM_001180573.1_Bruggeman | cds-NP_010551.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:965172-966185:+ | gene-YDR265W_CAT1 | rna-NM_001180573.1_CAT1 | cds-NP_010551.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:945602-946615:+ | gene-YDR265W_CBS1585 | rna-NM_001180573.1_CBS1585 | cds-NP_010551.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:963636-964649:+ | gene-YDR265W_CBS436 | rna-NM_001180573.1_CBS436 | cds-NP_010551.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:942285-943298:+ | gene-YDR265W_CBS6412 | rna-NM_001180573.1_CBS6412 | cds-NP_010551.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:963521-964534:+ | gene-YDR265W_CBS6413 | rna-NM_001180573.1_CBS6413 | cds-NP_010551.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:997507-998520:+ | gene-YDR265W_CENPK1137D | rna-NM_001180573.1_CENPK1137D | cds-NP_010551.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:949702-950715:+ | gene-YDR265W_EthanolRed | rna-NM_001180573.1_EthanolRed | cds-NP_010551.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:957904-958917:+ | gene-YDR265W_FaliES1 | rna-NM_001180573.1_FaliES1 | cds-NP_010551.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000176.1:6161-7174:+ | gene-YDR265W_JAY291 | rna-NM_001180573.1_JAY291 | cds-NP_010551.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:962966-963979:+ | gene-YDR265W_MUCL30387 | rna-NM_001180573.1_MUCL30387 | cds-NP_010551.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:950675-951688:+ | gene-YDR265W_MUCL30388 | rna-NM_001180573.1_MUCL30388 | cds-NP_010551.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:937408-938421:+ | gene-YDR265W_MUCL39482 | rna-NM_001180573.1_MUCL39482 | cds-NP_010551.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:877404-878417:+ | gene-YDR265W_MUCL42920 | rna-NM_001180573.1_MUCL42920 | cds-NP_010551.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:998787-999800:+ | gene-YDR265W_NCIM3186 | rna-NM_001180573.1_NCIM3186 | cds-NP_010551.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:950698-951711:+ | gene-YDR265W_NCYC1407 | rna-NM_001180573.1_NCYC1407 | cds-NP_010551.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:961329-962342:+ | gene-YDR265W_PE2H3 | rna-NM_001180573.1_PE2H3 | cds-NP_010551.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:966605-967618:+ | gene-YDR265W_PE2H4 | rna-NM_001180573.1_PE2H4 | cds-NP_010551.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:998864-999877:+ | gene-YDR265W_S288C | rna-NM_001180573.1_S288C | cds-NP_010551.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000102.1:6486-7499:+ | gene-YDR265W_SA1 | rna-NM_001180573.1_SA1 | cds-NP_010551.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:962189-963202:+ | gene-YDR265W_ThermosaccDry | rna-NM_001180573.1_ThermosaccDry | cds-NP_010551.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:977785-978798:+ | gene-YDR265W_VR1 | rna-NM_001180573.1_VR1 | cds-NP_010551.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:6318-7331:+ | gene-YDR265W_ZTW1 | rna-NM_001180573.1_ZTW1 | cds-NP_010551.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:958591-959595:+ | gene-YDR265W_Sparadoxus | rna-NM_001180573.1_Sparadoxus | cds-NP_010551.1_Sparadoxus | 86.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |