Gene name: PEX1
Reference locus (S288C): YKL197C
Gene biotype: protein_coding
Description: Peroxisomal ATPase PEX1; AAA-peroxin; heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; induced by oleic acid and upregulated during anaerobiosis; mutations in human PEX1 can lead to severe peroxisomal disorders and early death
Top 10 interactors (score): PEX6 (0.999); PEX13 (0.997); PEX12 (0.994); PEX5 (0.993); PEX15 (0.993); PEX10 (0.982); PEX14 (0.982); PEX11 (0.98); PEX3 (0.979); PEX2 (0.974); PEX19 (0.966); PEX17 (0.941); PEX4 (0.94); PEX7 (0.918); FOX2 (0.909); PEX22 (0.894); UBI4 (0.834); PEX8 (0.828); PEX9 (0.827); PEX18 (0.82)
Homologues (species, bitscore): PEX1 (Homo sapiens, 357.5); Pex1 (Mus musculus, 356.7); pex1 (Danio rerio, 341.7); pex1 (Xenopus tropicalis, 357.1); Pex1 (Drosophila melanogaster, 293.1); prx-1 (Caenorhabditis elegans, 246.5); PEX1 (Arabidopsis thaliana, 321.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:57093-60224:- | gene-YKL197C_AKU4011 | rna-NM_001179763.1_AKU4011 | cds-NP_012724.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:34055-37186:- | gene-YKL197C_BG1 | rna-NM_001179763.1_BG1 | cds-NP_012724.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:74747-77878:- | gene-YKL197C_Bruggeman | rna-NM_001179763.1_Bruggeman | cds-NP_012724.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:69912-73043:- | gene-YKL197C_CAT1 | rna-NM_001179763.1_CAT1 | cds-NP_012724.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:69078-72209:- | gene-YKL197C_CBS1585 | rna-NM_001179763.1_CBS1585 | cds-NP_012724.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:68305-71436:- | gene-YKL197C_CBS436 | rna-NM_001179763.1_CBS436 | cds-NP_012724.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:54335-57466:- | gene-YKL197C_CBS6412 | rna-NM_001179763.1_CBS6412 | cds-NP_012724.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:69715-72846:- | gene-YKL197C_CBS6413 | rna-NM_001179763.1_CBS6413 | cds-NP_012724.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:70509-73640:- | gene-YKL197C_CENPK1137D | rna-NM_001179763.1_CENPK1137D | cds-NP_012724.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:68525-71656:- | gene-YKL197C_EthanolRed | rna-NM_001179763.1_EthanolRed | cds-NP_012724.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:68584-71715:- | gene-YKL197C_FaliES1 | rna-NM_001179763.1_FaliES1 | cds-NP_012724.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:68138-71269:- | gene-YKL197C_JAY291 | rna-NM_001179763.1_JAY291 | cds-NP_012724.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:77278-80409:- | gene-YKL197C_MUCL30387 | rna-NM_001179763.1_MUCL30387 | cds-NP_012724.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:71370-74501:- | gene-YKL197C_MUCL30388 | rna-NM_001179763.1_MUCL30388 | cds-NP_012724.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:69135-72266:- | gene-YKL197C_MUCL39482 | rna-NM_001179763.1_MUCL39482 | cds-NP_012724.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:72673-75804:- | gene-YKL197C_MUCL42920 | rna-NM_001179763.1_MUCL42920 | cds-NP_012724.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:70723-73854:- | gene-YKL197C_NCIM3186 | rna-NM_001179763.1_NCIM3186 | cds-NP_012724.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:69159-72290:- | gene-YKL197C_NCYC1407 | rna-NM_001179763.1_NCYC1407 | cds-NP_012724.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:76678-79809:- | gene-YKL197C_PE2H3 | rna-NM_001179763.1_PE2H3 | cds-NP_012724.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:72972-76103:- | gene-YKL197C_PE2H4 | rna-NM_001179763.1_PE2H4 | cds-NP_012724.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:70734-73865:- | gene-YKL197C_S288C | rna-NM_001179763.1_S288C | cds-NP_012724.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000113.1:4607-7738:- | gene-YKL197C_SA1 | rna-NM_001179763.1_SA1 | cds-NP_012724.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:69332-72463:- | gene-YKL197C_ThermosaccDry | rna-NM_001179763.1_ThermosaccDry | cds-NP_012724.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:68384-71515:- | gene-YKL197C_VR1 | rna-NM_001179763.1_VR1 | cds-NP_012724.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:68253-71384:- | gene-YKL197C_ZTW1 | rna-NM_001179763.1_ZTW1 | cds-NP_012724.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:76890-80021:- | gene-YKL197C_Sparadoxus | rna-NM_001179763.1_Sparadoxus | cds-NP_012724.1_Sparadoxus | 87.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |