Gene name: PET54
Reference locus (S288C): YGR222W
Gene biotype: protein_coding
Description: Protein PET54; Mitochondrial inner membrane protein; binds to the 5' UTR of the COX3 mRNA to activate its translation together with Pet122p and Pet494p; also binds to the COX1 Group I intron AI5 beta to facilitate exon ligation during splicing
Top 10 interactors (score): PET122 (0.973); PET494 (0.969); PET111 (0.947); COX3 (0.943); AI5_BETA (0.934); PET309 (0.924); MSS18 (0.842); COX1 (0.832); MNE1 (0.816); MRS1 (0.78); AI5_ALPHA (0.75); SUV3 (0.747); MAM33 (0.746); MSS116 (0.744); MSS51 (0.723); CBT1 (0.716); PET123 (0.715); MTF2 (0.714); CBS2 (0.712); CBP2 (0.698)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:905225-906106:+ | gene-YGR222W_AKU4011 | rna-NM_001181351.3_AKU4011 | cds-NP_011738.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:185448-186329:+ | gene-YGR222W_BG1 | rna-NM_001181351.3_BG1 | cds-NP_011738.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:912929-913810:+ | gene-YGR222W_Bruggeman | rna-NM_001181351.3_Bruggeman | cds-NP_011738.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:911179-912060:+ | gene-YGR222W_CAT1 | rna-NM_001181351.3_CAT1 | cds-NP_011738.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:908175-909056:+ | gene-YGR222W_CBS1585 | rna-NM_001181351.3_CBS1585 | cds-NP_011738.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:911857-912738:+ | gene-YGR222W_CBS436 | rna-NM_001181351.3_CBS436 | cds-NP_011738.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:899045-899926:+ | gene-YGR222W_CBS6412 | rna-NM_001181351.3_CBS6412 | cds-NP_011738.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:905104-905985:+ | gene-YGR222W_CBS6413 | rna-NM_001181351.3_CBS6413 | cds-NP_011738.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:939505-940386:+ | gene-YGR222W_CENPK1137D | rna-NM_001181351.3_CENPK1137D | cds-NP_011738.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:893555-894436:+ | gene-YGR222W_EthanolRed | rna-NM_001181351.3_EthanolRed | cds-NP_011738.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:897946-898827:+ | gene-YGR222W_FaliES1 | rna-NM_001181351.3_FaliES1 | cds-NP_011738.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:131437-132318:- | gene-YGR222W_JAY291 | rna-NM_001181351.3_JAY291 | cds-NP_011738.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:910844-911725:+ | gene-YGR222W_MUCL30387 | rna-NM_001181351.3_MUCL30387 | cds-NP_011738.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:910100-910981:+ | gene-YGR222W_MUCL30388 | rna-NM_001181351.3_MUCL30388 | cds-NP_011738.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:903252-904133:+ | gene-YGR222W_MUCL39482 | rna-NM_001181351.3_MUCL39482 | cds-NP_011738.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:921804-922685:+ | gene-YGR222W_MUCL42920 | rna-NM_001181351.3_MUCL42920 | cds-NP_011738.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:939923-940804:+ | gene-YGR222W_NCIM3186 | rna-NM_001181351.3_NCIM3186 | cds-NP_011738.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:898904-899785:+ | gene-YGR222W_NCYC1407 | rna-NM_001181351.3_NCYC1407 | cds-NP_011738.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:923844-924725:+ | gene-YGR222W_PE2H3 | rna-NM_001181351.3_PE2H3 | cds-NP_011738.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:928953-929834:+ | gene-YGR222W_PE2H4 | rna-NM_001181351.3_PE2H4 | cds-NP_011738.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:939923-940804:+ | gene-YGR222W_S288C | rna-NM_001181351.3_S288C | cds-NP_011738.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:60961-61842:- | gene-YGR222W_SA1 | rna-NM_001181351.3_SA1 | cds-NP_011738.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:918457-919338:+ | gene-YGR222W_ThermosaccDry | rna-NM_001181351.3_ThermosaccDry | cds-NP_011738.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1023271-1024152:+ | gene-YGR222W_VR1 | rna-NM_001181351.3_VR1 | cds-NP_011738.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:219893-220774:+ | gene-YGR222W_ZTW1 | rna-NM_001181351.3_ZTW1 | cds-NP_011738.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:910590-911483:+ | gene-YGR222W_Sparadoxus | rna-NM_001181351.3_Sparadoxus | cds-NP_011738.3_Sparadoxus | 84.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |