Gene name: PET309
Reference locus (S288C): YLR067C
Gene biotype: protein_coding
Description: Pentatricopeptide repeat-containing protein PET309, mitochondrial; Specific translational activator for the COX1 mRNA; binds to the COX1 mRNA; also influences stability of intron-containing COX1 primary transcripts; localizes to the mitochondrial inner membrane; contains 12 pentatricopeptide repeats (PPRs)
Top 10 interactors (score): MSS51 (0.959); RPO41 (0.954); MTF2 (0.939); COX1 (0.936); ATP6 (0.935); PET111 (0.935); SHY1 (0.925); PET54 (0.924); OLI1 (0.903); COX2 (0.882); CCM1 (0.873); COX15 (0.869); CBP1 (0.869); COX20 (0.869); MRPL4 (0.865); PET122 (0.86); PET494 (0.859); COB (0.847); ATP22 (0.841); COX10 (0.834)
Homologues (species, bitscore): AT1G31840 (Arabidopsis thaliana, 66.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:250285-253182:- | gene-YLR067C_AKU4011 | rna-NM_001181954.1_AKU4011 | cds-NP_013168.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:213426-216323:- | gene-YLR067C_BG1 | rna-NM_001181954.1_BG1 | cds-NP_013168.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:260194-263091:- | gene-YLR067C_Bruggeman | rna-NM_001181954.1_Bruggeman | cds-NP_013168.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:260511-263408:- | gene-YLR067C_CAT1 | rna-NM_001181954.1_CAT1 | cds-NP_013168.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:257401-260298:- | gene-YLR067C_CBS1585 | rna-NM_001181954.1_CBS1585 | cds-NP_013168.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:248023-250920:- | gene-YLR067C_CBS436 | rna-NM_001181954.1_CBS436 | cds-NP_013168.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:255839-258736:- | gene-YLR067C_CBS6412 | rna-NM_001181954.1_CBS6412 | cds-NP_013168.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:257672-260569:- | gene-YLR067C_CBS6413 | rna-NM_001181954.1_CBS6413 | cds-NP_013168.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:252835-255732:- | gene-YLR067C_CENPK1137D | rna-NM_001181954.1_CENPK1137D | cds-NP_013168.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:249806-252703:- | gene-YLR067C_EthanolRed | rna-NM_001181954.1_EthanolRed | cds-NP_013168.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:249682-252579:- | gene-YLR067C_FaliES1 | rna-NM_001181954.1_FaliES1 | cds-NP_013168.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:24617-27514:- | gene-YLR067C_JAY291 | rna-NM_001181954.1_JAY291 | cds-NP_013168.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:257563-260460:- | gene-YLR067C_MUCL30387 | rna-NM_001181954.1_MUCL30387 | cds-NP_013168.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:265206-268103:- | gene-YLR067C_MUCL30388 | rna-NM_001181954.1_MUCL30388 | cds-NP_013168.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:257912-260809:- | gene-YLR067C_MUCL39482 | rna-NM_001181954.1_MUCL39482 | cds-NP_013168.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:257833-260730:- | gene-YLR067C_MUCL42920 | rna-NM_001181954.1_MUCL42920 | cds-NP_013168.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:267787-270684:- | gene-YLR067C_NCIM3186 | rna-NM_001181954.1_NCIM3186 | cds-NP_013168.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:249987-252884:- | gene-YLR067C_NCYC1407 | rna-NM_001181954.1_NCYC1407 | cds-NP_013168.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:255854-258751:- | gene-YLR067C_PE2H3 | rna-NM_001181954.1_PE2H3 | cds-NP_013168.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:255595-258492:- | gene-YLR067C_PE2H4 | rna-NM_001181954.1_PE2H4 | cds-NP_013168.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:267813-270710:- | gene-YLR067C_S288C | rna-NM_001181954.1_S288C | cds-NP_013168.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:103480-106377:+ | gene-YLR067C_SA1 | rna-NM_001181954.1_SA1 | cds-NP_013168.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:249858-252755:- | gene-YLR067C_ThermosaccDry | rna-NM_001181954.1_ThermosaccDry | cds-NP_013168.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:263547-266444:- | gene-YLR067C_VR1 | rna-NM_001181954.1_VR1 | cds-NP_013168.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:249245-252142:- | gene-YLR067C_ZTW1 | rna-NM_001181954.1_ZTW1 | cds-NP_013168.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:258137-261034:- | gene-YLR067C_Sparadoxus | rna-NM_001181954.1_Sparadoxus | cds-NP_013168.1_Sparadoxus | 89.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |