Gene name: PES4
Reference locus (S288C): YFR023W
Gene biotype: protein_coding
Description: Poly(A) binding protein, suppressor of DNA polymerase epsilon mutation; PES4 has a paralog, MIP6, that arose from the whole genome duplication
Top 10 interactors (score): PBP1 (0.984); DHH1 (0.937); CDC33 (0.929); TIF4631 (0.854); TIF4632 (0.854); TIF1 (0.775); TIF2 (0.775); FAL1 (0.757); SCD6 (0.747); HCA4 (0.715); DBP10 (0.7); SUP35 (0.693); DBP7 (0.687); SGN1 (0.678); SPB4 (0.674); DRS1 (0.659); CDA1 (0.641); NCL1 (0.627); SUB2 (0.624); SRO9 (0.623)
Homologues (species, bitscore): PABPC1 (Homo sapiens, 154.8); Gm10110 (Mus musculus, 154.5); pabpc1b (Danio rerio, 153.7); pabpc1 (Xenopus tropicalis, 149.4); pAbp (Drosophila melanogaster, 140.2); pab-1 (Caenorhabditis elegans, 148.3); PAB2 (Arabidopsis thaliana, 155.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:190079-191914:+ | gene-YFR023W_AKU4011 | rna-NM_001179988.1_AKU4011 | cds-NP_116678.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:68750-70585:- | gene-YFR023W_BG1 | rna-NM_001179988.1_BG1 | cds-NP_116678.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:192919-194754:+ | gene-YFR023W_Bruggeman | rna-NM_001179988.1_Bruggeman | cds-NP_116678.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:195448-197283:+ | gene-YFR023W_CAT1 | rna-NM_001179988.1_CAT1 | cds-NP_116678.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:191570-193405:+ | gene-YFR023W_CBS1585 | rna-NM_001179988.1_CBS1585 | cds-NP_116678.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:164800-166635:+ | gene-YFR023W_CBS436 | rna-NM_001179988.1_CBS436 | cds-NP_116678.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:190651-192486:+ | gene-YFR023W_CBS6412 | rna-NM_001179988.1_CBS6412 | cds-NP_116678.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:193306-195141:+ | gene-YFR023W_CBS6413 | rna-NM_001179988.1_CBS6413 | cds-NP_116678.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:195915-197750:+ | gene-YFR023W_CENPK1137D | rna-NM_001179988.1_CENPK1137D | cds-NP_116678.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:189187-191022:+ | gene-YFR023W_EthanolRed | rna-NM_001179988.1_EthanolRed | cds-NP_116678.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:190837-192672:+ | gene-YFR023W_FaliES1 | rna-NM_001179988.1_FaliES1 | cds-NP_116678.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000452.1:37593-39428:+ | gene-YFR023W_JAY291 | rna-NM_001179988.1_JAY291 | cds-NP_116678.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:193398-195233:+ | gene-YFR023W_MUCL30387 | rna-NM_001179988.1_MUCL30387 | cds-NP_116678.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:189655-191490:+ | gene-YFR023W_MUCL30388 | rna-NM_001179988.1_MUCL30388 | cds-NP_116678.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:189489-191324:+ | gene-YFR023W_MUCL39482 | rna-NM_001179988.1_MUCL39482 | cds-NP_116678.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:188797-190632:+ | gene-YFR023W_MUCL42920 | rna-NM_001179988.1_MUCL42920 | cds-NP_116678.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:199873-201708:+ | gene-YFR023W_NCIM3186 | rna-NM_001179988.1_NCIM3186 | cds-NP_116678.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:190371-192206:+ | gene-YFR023W_NCYC1407 | rna-NM_001179988.1_NCYC1407 | cds-NP_116678.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:232807-234642:+ | gene-YFR023W_PE2H3 | rna-NM_001179988.1_PE2H3 | cds-NP_116678.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:232355-234190:+ | gene-YFR023W_PE2H4 | rna-NM_001179988.1_PE2H4 | cds-NP_116678.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:199874-201709:+ | gene-YFR023W_S288C | rna-NM_001179988.1_S288C | cds-NP_116678.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:122727-124562:- | gene-YFR023W_SA1 | rna-NM_001179988.1_SA1 | cds-NP_116678.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:189994-191829:+ | gene-YFR023W_ThermosaccDry | rna-NM_001179988.1_ThermosaccDry | cds-NP_116678.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:206038-207873:+ | gene-YFR023W_VR1 | rna-NM_001179988.1_VR1 | cds-NP_116678.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:120467-122302:+ | gene-YFR023W_ZTW1 | rna-NM_001179988.1_ZTW1 | cds-NP_116678.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:213952-215787:+ | gene-YFR023W_Sparadoxus | rna-NM_001179988.1_Sparadoxus | cds-NP_116678.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |