Gene name: PER1
Reference locus (S288C): YCR044C
Gene biotype: protein_coding
Description: Post-gpi attachment to proteins factor 3; Protein of the endoplasmic reticulum; required for GPI-phospholipase A2 activity that remodels the GPI anchor as a prerequisite for association of GPI-anchored proteins with lipid rafts; functionally complemented by human ortholog PERLD1
Top 10 interactors (score): CDC1 (0.983); CWH43 (0.937); BST1 (0.931); GPI13 (0.801); MCD4 (0.79); GUP1 (0.786); GWT1 (0.757); YCR047W-A (0.745); YCL068C (0.744); GPI12 (0.718); YCL001W-B (0.694); GPI16 (0.685); GPI18 (0.674); GPI14 (0.674); LAS21 (0.673); GPI1 (0.651); ISC1 (0.647); SMF1 (0.629); YCR043C (0.617); GPI2 (0.59)
Homologues (species, bitscore): PGAP3 (Homo sapiens, 120.2); Pgap3 (Mus musculus, 120.9); PGAP3 (Danio rerio, 102.1); pgap3 (Xenopus tropicalis, 132.5); PGAP3 (Drosophila melanogaster, 131.0); R01B10.4 (Caenorhabditis elegans, 89.0); AT1G16560 (Arabidopsis thaliana, 113.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:201310-202383:- | gene-YCR044C_AKU4011 | rna-NM_001178758.1_AKU4011 | cds-NP_009973.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:55501-56574:- | gene-YCR044C_BG1 | rna-NM_001178758.1_BG1 | cds-NP_009973.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:197313-198386:- | gene-YCR044C_Bruggeman | rna-NM_001178758.1_Bruggeman | cds-NP_009973.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:208666-209739:- | gene-YCR044C_CAT1 | rna-NM_001178758.1_CAT1 | cds-NP_009973.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:196107-197180:- | gene-YCR044C_CBS1585 | rna-NM_001178758.1_CBS1585 | cds-NP_009973.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:208014-209087:- | gene-YCR044C_CBS436 | rna-NM_001178758.1_CBS436 | cds-NP_009973.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:187829-188902:- | gene-YCR044C_CBS6412 | rna-NM_001178758.1_CBS6412 | cds-NP_009973.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:202196-203269:- | gene-YCR044C_CBS6413 | rna-NM_001178758.1_CBS6413 | cds-NP_009973.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:205943-207016:- | gene-YCR044C_CENPK1137D | rna-NM_001178758.1_CENPK1137D | cds-NP_009973.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:197300-198373:- | gene-YCR044C_EthanolRed | rna-NM_001178758.1_EthanolRed | cds-NP_009973.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:202465-203538:- | gene-YCR044C_FaliES1 | rna-NM_001178758.1_FaliES1 | cds-NP_009973.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:19622-20695:+ | gene-YCR044C_JAY291 | rna-NM_001178758.1_JAY291 | cds-NP_009973.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:194280-195353:- | gene-YCR044C_MUCL30387 | rna-NM_001178758.1_MUCL30387 | cds-NP_009973.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:193667-194740:- | gene-YCR044C_MUCL30388 | rna-NM_001178758.1_MUCL30388 | cds-NP_009973.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:202680-203753:- | gene-YCR044C_MUCL39482 | rna-NM_001178758.1_MUCL39482 | cds-NP_009973.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:199131-200204:- | gene-YCR044C_MUCL42920 | rna-NM_001178758.1_MUCL42920 | cds-NP_009973.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:206509-207582:- | gene-YCR044C_NCIM3186 | rna-NM_001178758.1_NCIM3186 | cds-NP_009973.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:203572-204645:- | gene-YCR044C_NCYC1407 | rna-NM_001178758.1_NCYC1407 | cds-NP_009973.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:212240-213313:- | gene-YCR044C_PE2H3 | rna-NM_001178758.1_PE2H3 | cds-NP_009973.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:206771-207844:- | gene-YCR044C_PE2H4 | rna-NM_001178758.1_PE2H4 | cds-NP_009973.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:206877-207950:- | gene-YCR044C_S288C | rna-NM_001178758.1_S288C | cds-NP_009973.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:6759-7832:- | gene-YCR044C_SA1 | rna-NM_001178758.1_SA1 | cds-NP_009973.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:202448-203521:- | gene-YCR044C_ThermosaccDry | rna-NM_001178758.1_ThermosaccDry | cds-NP_009973.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:213727-214800:- | gene-YCR044C_VR1 | rna-NM_001178758.1_VR1 | cds-NP_009973.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:200248-201321:- | gene-YCR044C_ZTW1 | rna-NM_001178758.1_ZTW1 | cds-NP_009973.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:234408-235481:- | gene-YCR044C_Sparadoxus | rna-NM_001178758.1_Sparadoxus | cds-NP_009973.1_Sparadoxus | 88.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |