Gene name: PEP3
Reference locus (S288C): YLR148W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 18; Component of CORVET membrane tethering complex; vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis
Top 10 interactors (score): VPS41 (0.999); VTI1 (0.999); VAM6 (0.999); VAM7 (0.999); VPS33 (0.999); VPS8 (0.999); VPS16 (0.999); PEP5 (0.999); VPS3 (0.999); YPT7 (0.999); VAM3 (0.999); VPS45 (0.982); YPT52 (0.978); SNF8 (0.968); VMA10 (0.962); SEC1 (0.958); MON1 (0.952); PEP7 (0.95); VPS21 (0.938); VPS34 (0.937)
Homologues (species, bitscore): VPS18 (Homo sapiens, 204.9); Vps18 (Mus musculus, 201.1); vps18 (Danio rerio, 212.2); vps18 (Xenopus tropicalis, 215.7); dor (Drosophila melanogaster, 151.4); vps-18 (Caenorhabditis elegans, 128.6); AT1G12470 (Arabidopsis thaliana, 207.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:417121-419877:+ | gene-YLR148W_AKU4011 | rna-NM_001182035.1_AKU4011 | cds-NP_013249.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:380892-383648:+ | gene-YLR148W_BG1 | rna-NM_001182035.1_BG1 | cds-NP_013249.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:429017-431773:+ | gene-YLR148W_Bruggeman | rna-NM_001182035.1_Bruggeman | cds-NP_013249.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:428402-431158:+ | gene-YLR148W_CAT1 | rna-NM_001182035.1_CAT1 | cds-NP_013249.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:424264-427020:+ | gene-YLR148W_CBS1585 | rna-NM_001182035.1_CBS1585 | cds-NP_013249.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:414501-417257:+ | gene-YLR148W_CBS436 | rna-NM_001182035.1_CBS436 | cds-NP_013249.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:422682-425438:+ | gene-YLR148W_CBS6412 | rna-NM_001182035.1_CBS6412 | cds-NP_013249.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:424529-427285:+ | gene-YLR148W_CBS6413 | rna-NM_001182035.1_CBS6413 | cds-NP_013249.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:419659-422415:+ | gene-YLR148W_CENPK1137D | rna-NM_001182035.1_CENPK1137D | cds-NP_013249.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:417322-420078:+ | gene-YLR148W_EthanolRed | rna-NM_001182035.1_EthanolRed | cds-NP_013249.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:416833-419589:+ | gene-YLR148W_FaliES1 | rna-NM_001182035.1_FaliES1 | cds-NP_013249.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:23493-26249:+ | gene-YLR148W_JAY291 | rna-NM_001182035.1_JAY291 | cds-NP_013249.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:429022-431778:+ | gene-YLR148W_MUCL30387 | rna-NM_001182035.1_MUCL30387 | cds-NP_013249.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:433822-436578:+ | gene-YLR148W_MUCL30388 | rna-NM_001182035.1_MUCL30388 | cds-NP_013249.1_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:424773-427529:+ | gene-YLR148W_MUCL39482 | rna-NM_001182035.1_MUCL39482 | cds-NP_013249.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:424927-427683:+ | gene-YLR148W_MUCL42920 | rna-NM_001182035.1_MUCL42920 | cds-NP_013249.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:434615-437371:+ | gene-YLR148W_NCIM3186 | rna-NM_001182035.1_NCIM3186 | cds-NP_013249.1_NCIM3186 | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:417045-419801:+ | gene-YLR148W_NCYC1407 | rna-NM_001182035.1_NCYC1407 | cds-NP_013249.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:422602-425358:+ | gene-YLR148W_PE2H3 | rna-NM_001182035.1_PE2H3 | cds-NP_013249.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:422343-425099:+ | gene-YLR148W_PE2H4 | rna-NM_001182035.1_PE2H4 | cds-NP_013249.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:434641-437397:+ | gene-YLR148W_S288C | rna-NM_001182035.1_S288C | cds-NP_013249.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:60538-63294:+ | gene-YLR148W_SA1 | rna-NM_001182035.1_SA1 | cds-NP_013249.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:418043-420799:+ | gene-YLR148W_ThermosaccDry | rna-NM_001182035.1_ThermosaccDry | cds-NP_013249.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:430743-433499:+ | gene-YLR148W_VR1 | rna-NM_001182035.1_VR1 | cds-NP_013249.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:415829-418585:+ | gene-YLR148W_ZTW1 | rna-NM_001182035.1_ZTW1 | cds-NP_013249.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:425991-428750:+ | gene-YLR148W_Sparadoxus | rna-NM_001182035.1_Sparadoxus | cds-NP_013249.1_Sparadoxus | 89.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |