Gene name: PEP12
Reference locus (S288C): YOR036W
Gene biotype: protein_coding
Description: Syntaxin PEP12; Target membrane receptor (t-SNARE); for vesicular intermediates traveling between the Golgi apparatus and the vacuole; controls entry of biosynthetic, endocytic, and retrograde traffic into the prevacuolar compartment; syntaxin
Top 10 interactors (score): VTI1 (0.999); VPS33 (0.999); VPS45 (0.998); TLG1 (0.998); YKT6 (0.994); VPS16 (0.994); SED5 (0.985); PEP7 (0.981); SEC22 (0.98); SNC1 (0.98); VAM7 (0.974); SEC17 (0.967); SEC9 (0.966); SEC18 (0.964); SEC1 (0.964); SNC2 (0.954); SPO20 (0.953); GOS1 (0.953); BOS1 (0.951); NYV1 (0.951)
Homologues (species, bitscore): STX12 (Homo sapiens, 79.3); Stx12 (Mus musculus, 77.0); stx12 (Danio rerio, 77.4); stx7 (Xenopus tropicalis, 77.4); Syx16 (Drosophila melanogaster, 65.1); unc-64 (Caenorhabditis elegans, 59.7); VAM3 (Arabidopsis thaliana, 91.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:384689-385555:+ | gene-YOR036W_AKU4011 | rna-NM_001183455.1_AKU4011 | cds-NP_014679.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:200265-201131:+ | gene-YOR036W_BG1 | rna-NM_001183455.1_BG1 | cds-NP_014679.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:387430-388296:+ | gene-YOR036W_Bruggeman | rna-NM_001183455.1_Bruggeman | cds-NP_014679.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:385583-386449:+ | gene-YOR036W_CAT1 | rna-NM_001183455.1_CAT1 | cds-NP_014679.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:379380-380246:+ | gene-YOR036W_CBS1585 | rna-NM_001183455.1_CBS1585 | cds-NP_014679.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:383734-384600:+ | gene-YOR036W_CBS436 | rna-NM_001183455.1_CBS436 | cds-NP_014679.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:378734-379600:+ | gene-YOR036W_CBS6412 | rna-NM_001183455.1_CBS6412 | cds-NP_014679.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:386109-386975:+ | gene-YOR036W_CBS6413 | rna-NM_001183455.1_CBS6413 | cds-NP_014679.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:400347-401213:+ | gene-YOR036W_CENPK1137D | rna-NM_001183455.1_CENPK1137D | cds-NP_014679.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:381387-382253:+ | gene-YOR036W_EthanolRed | rna-NM_001183455.1_EthanolRed | cds-NP_014679.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:384735-385601:+ | gene-YOR036W_FaliES1 | rna-NM_001183455.1_FaliES1 | cds-NP_014679.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000035.1:55382-56248:+ | gene-YOR036W_JAY291 | rna-NM_001183455.1_JAY291 | cds-NP_014679.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:392198-393064:+ | gene-YOR036W_MUCL30387 | rna-NM_001183455.1_MUCL30387 | cds-NP_014679.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:395502-396368:+ | gene-YOR036W_MUCL30388 | rna-NM_001183455.1_MUCL30388 | cds-NP_014679.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:386863-387729:+ | gene-YOR036W_MUCL39482 | rna-NM_001183455.1_MUCL39482 | cds-NP_014679.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:401677-402543:+ | gene-YOR036W_MUCL42920 | rna-NM_001183455.1_MUCL42920 | cds-NP_014679.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:400237-401103:+ | gene-YOR036W_NCIM3186 | rna-NM_001183455.1_NCIM3186 | cds-NP_014679.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:393565-394431:+ | gene-YOR036W_NCYC1407 | rna-NM_001183455.1_NCYC1407 | cds-NP_014679.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:392401-393267:+ | gene-YOR036W_PE2H3 | rna-NM_001183455.1_PE2H3 | cds-NP_014679.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:402782-403648:+ | gene-YOR036W_PE2H4 | rna-NM_001183455.1_PE2H4 | cds-NP_014679.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:400348-401214:+ | gene-YOR036W_S288C | rna-NM_001183455.1_S288C | cds-NP_014679.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:368266-369132:+ | gene-YOR036W_SA1 | rna-NM_001183455.1_SA1 | cds-NP_014679.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:383275-384141:+ | gene-YOR036W_ThermosaccDry | rna-NM_001183455.1_ThermosaccDry | cds-NP_014679.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:384164-385030:+ | gene-YOR036W_VR1 | rna-NM_001183455.1_VR1 | cds-NP_014679.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:117902-118768:+ | gene-YOR036W_ZTW1 | rna-NM_001183455.1_ZTW1 | cds-NP_014679.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:390596-391462:+ | gene-YOR036W_Sparadoxus | rna-NM_001183455.1_Sparadoxus | cds-NP_014679.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |