Gene name: PEP1
Reference locus (S288C): YBL017C
Gene biotype: protein_coding
Description: Vacuolar protein sorting/targeting protein VPS10; Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments; Belongs to the VPS10-related sortilin family
Top 10 interactors (score): VPS35 (0.996); PRC1 (0.995); PEP8 (0.988); VPS5 (0.97); VPS29 (0.951); KEX2 (0.94); VPS17 (0.916); SNX3 (0.898); STE13 (0.896); VPS27 (0.884); PEP4 (0.859); GGA2 (0.857); PEP12 (0.857); VPH1 (0.842); CHC1 (0.841); VPS21 (0.837); MRL1 (0.833); YPT7 (0.83); VPS13 (0.816); VTI1 (0.814)
Homologues (species, bitscore): SORCS2 (Homo sapiens, 167.2); Sorl1 (Mus musculus, 165.6); sorl1 (Danio rerio, 176.8); sorl1 (Xenopus tropicalis, 161.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:180455-185194:- | gene-YBL017C_AKU4011 | rna-NM_001178257.1_AKU4011 | cds-NP_009536.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:171281-176014:- | gene-YBL017C_BG1 | rna-NM_001178257.1_BG1 | cds-NP_009536.1_BG1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:181041-185780:- | gene-YBL017C_Bruggeman | rna-NM_001178257.1_Bruggeman | cds-NP_009536.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:183650-188383:- | gene-YBL017C_CAT1 | rna-NM_001178257.1_CAT1 | cds-NP_009536.1_CAT1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:173010-177749:- | gene-YBL017C_CBS1585 | rna-NM_001178257.1_CBS1585 | cds-NP_009536.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:181463-186196:- | gene-YBL017C_CBS436 | rna-NM_001178257.1_CBS436 | cds-NP_009536.1_CBS436 | 98.8 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:271789-276528:- | gene-YBL017C_CBS6412 | rna-NM_001178257.1_CBS6412 | cds-NP_009536.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:178580-183319:- | gene-YBL017C_CBS6413 | rna-NM_001178257.1_CBS6413 | cds-NP_009536.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:180609-185348:- | gene-YBL017C_CENPK1137D | rna-NM_001178257.1_CENPK1137D | cds-NP_009536.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:307997-312736:- | gene-YBL017C_EthanolRed | rna-NM_001178257.1_EthanolRed | cds-NP_009536.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:195263-200002:- | gene-YBL017C_FaliES1 | rna-NM_001178257.1_FaliES1 | cds-NP_009536.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:20932-25665:- | gene-YBL017C_JAY291 | rna-NM_001178257.1_JAY291 | cds-NP_009536.1_JAY291 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:180898-185631:- | gene-YBL017C_MUCL30387 | rna-NM_001178257.1_MUCL30387 | cds-NP_009536.1_MUCL30387 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:181940-186679:- | gene-YBL017C_MUCL30388 | rna-NM_001178257.1_MUCL30388 | cds-NP_009536.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:173195-177934:- | gene-YBL017C_MUCL39482 | rna-NM_001178257.1_MUCL39482 | cds-NP_009536.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:180470-185203:- | gene-YBL017C_MUCL42920 | rna-NM_001178257.1_MUCL42920 | cds-NP_009536.1_MUCL42920 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:186641-191380:- | gene-YBL017C_NCIM3186 | rna-NM_001178257.1_NCIM3186 | cds-NP_009536.1_NCIM3186 | 96.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:174344-179083:- | gene-YBL017C_NCYC1407 | rna-NM_001178257.1_NCYC1407 | cds-NP_009536.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:180569-185302:- | gene-YBL017C_PE2H3 | rna-NM_001178257.1_PE2H3 | cds-NP_009536.1_PE2H3 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:178213-182946:- | gene-YBL017C_PE2H4 | rna-NM_001178257.1_PE2H4 | cds-NP_009536.1_PE2H4 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:186844-191583:- | gene-YBL017C_S288C | rna-NM_001178257.1_S288C | cds-NP_009536.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:71565-76298:- | gene-YBL017C_SA1 | rna-NM_001178257.1_SA1 | cds-NP_009536.1_SA1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:195218-199957:- | gene-YBL017C_ThermosaccDry | rna-NM_001178257.1_ThermosaccDry | cds-NP_009536.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:177382-182115:- | gene-YBL017C_VR1 | rna-NM_001178257.1_VR1 | cds-NP_009536.1_VR1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:171929-176668:- | gene-YBL017C_ZTW1 | rna-NM_001178257.1_ZTW1 | cds-NP_009536.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:206863-211608:- | gene-YBL017C_Sparadoxus | rna-NM_001178257.1_Sparadoxus | cds-NP_009536.1_Sparadoxus | 87.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |