Gene name: PEF1
Reference locus (S288C): YGR058W
Gene biotype: protein_coding
Description: Peflin; Penta-EF-hand protein; required for polar bud growth and cell wall abscission; binds calcium and zinc with different affinity; localizes to bud site in G1, bud neck in G2; binds to Sec31p and modulates COPII coat assembly
Top 10 interactors (score): SEC31 (0.998); RIM13 (0.994); RIM20 (0.973); STP22 (0.926); BRO1 (0.918); SEC13 (0.732); ALG2 (0.685); ALG6 (0.666); CUL3 (0.637); TEF1 (0.617); TEF2 (0.616); HOG1 (0.596); SDD2 (0.591); COQ6 (0.583); SNF7 (0.576); CAF4 (0.573); SEC24 (0.569); ACT1 (0.556); CDC31 (0.555); MDM38 (0.553)
Homologues (species, bitscore): PEF1 (Homo sapiens, 72.8); Pdcd6 (Mus musculus, 71.6); pef1 (Danio rerio, 84.3); pef1 (Xenopus tropicalis, 76.6); CG17765 (Drosophila melanogaster, 69.7); M04F3.4 (Caenorhabditis elegans, 74.7); AT5G04170 (Arabidopsis thaliana, 71.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:589834-590841:+ | gene-YGR058W_AKU4011 | rna-NM_001181187.2_AKU4011 | cds-NP_011572.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:26230-27237:+ | gene-YGR058W_BG1 | rna-NM_001181187.2_BG1 | cds-NP_011572.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:592115-593122:+ | gene-YGR058W_Bruggeman | rna-NM_001181187.2_Bruggeman | cds-NP_011572.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:590541-591548:+ | gene-YGR058W_CAT1 | rna-NM_001181187.2_CAT1 | cds-NP_011572.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:591148-592155:+ | gene-YGR058W_CBS1585 | rna-NM_001181187.2_CBS1585 | cds-NP_011572.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:592439-593446:+ | gene-YGR058W_CBS436 | rna-NM_001181187.2_CBS436 | cds-NP_011572.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:583943-584950:+ | gene-YGR058W_CBS6412 | rna-NM_001181187.2_CBS6412 | cds-NP_011572.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:587945-588952:+ | gene-YGR058W_CBS6413 | rna-NM_001181187.2_CBS6413 | cds-NP_011572.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:605874-606881:+ | gene-YGR058W_CENPK1137D | rna-NM_001181187.2_CENPK1137D | cds-NP_011572.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:578076-579083:+ | gene-YGR058W_EthanolRed | rna-NM_001181187.2_EthanolRed | cds-NP_011572.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:581560-582567:+ | gene-YGR058W_FaliES1 | rna-NM_001181187.2_FaliES1 | cds-NP_011572.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:32500-33507:+ | gene-YGR058W_JAY291 | rna-NM_001181187.2_JAY291 | cds-NP_011572.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:588750-589757:+ | gene-YGR058W_MUCL30387 | rna-NM_001181187.2_MUCL30387 | cds-NP_011572.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:592144-593151:+ | gene-YGR058W_MUCL30388 | rna-NM_001181187.2_MUCL30388 | cds-NP_011572.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:586965-587972:+ | gene-YGR058W_MUCL39482 | rna-NM_001181187.2_MUCL39482 | cds-NP_011572.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:596774-597781:+ | gene-YGR058W_MUCL42920 | rna-NM_001181187.2_MUCL42920 | cds-NP_011572.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:606136-607143:+ | gene-YGR058W_NCIM3186 | rna-NM_001181187.2_NCIM3186 | cds-NP_011572.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:581163-582170:+ | gene-YGR058W_NCYC1407 | rna-NM_001181187.2_NCYC1407 | cds-NP_011572.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:584402-585409:+ | gene-YGR058W_PE2H3 | rna-NM_001181187.2_PE2H3 | cds-NP_011572.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:589509-590516:+ | gene-YGR058W_PE2H4 | rna-NM_001181187.2_PE2H4 | cds-NP_011572.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:606136-607143:+ | gene-YGR058W_S288C | rna-NM_001181187.2_S288C | cds-NP_011572.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:32600-33607:+ | gene-YGR058W_SA1 | rna-NM_001181187.2_SA1 | cds-NP_011572.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:600897-601904:+ | gene-YGR058W_ThermosaccDry | rna-NM_001181187.2_ThermosaccDry | cds-NP_011572.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:697822-698829:+ | gene-YGR058W_VR1 | rna-NM_001181187.2_VR1 | cds-NP_011572.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:56371-57378:+ | gene-YGR058W_ZTW1 | rna-NM_001181187.2_ZTW1 | cds-NP_011572.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:591408-592415:+ | gene-YGR058W_Sparadoxus | rna-NM_001181187.2_Sparadoxus | cds-NP_011572.2_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |