Gene name: PDX3
Reference locus (S288C): YBR035C
Gene biotype: protein_coding
Description: Pyridoxine (pyridoxamine) phosphate oxidase; has homologs in E. coli and Myxococcus xanthus; transcription is under the general control of nitrogen metabolism
Top 10 interactors (score): BUD17 (0.99); BUD16 (0.969); YPR127W (0.918); SNO1 (0.907); THI13 (0.9); THI11 (0.9); THI5 (0.9); THI12 (0.9); NNR2 (0.88); SNO3 (0.851); SNO2 (0.851); NNR1 (0.819); SNZ1 (0.809); SNZ3 (0.803); SNZ2 (0.803); YGR017W (0.802); SER1 (0.802); PDR16 (0.747); XPT1 (0.736); MRPL10 (0.724)
Homologues (species, bitscore): PNPO (Homo sapiens, 146.0); Pnpo (Mus musculus, 151.8); pnpo (Danio rerio, 165.2); pnpo (Xenopus tropicalis, 147.5); sgll (Drosophila melanogaster, 139.0); F57B9.1 (Caenorhabditis elegans, 139.4); PDXH (Arabidopsis thaliana, 164.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:288701-289387:- | gene-YBR035C_AKU4011 | rna-NM_001178383.1_AKU4011 | cds-NP_009591.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:278840-279526:- | gene-YBR035C_BG1 | rna-NM_001178383.1_BG1 | cds-NP_009591.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:289428-290114:- | gene-YBR035C_Bruggeman | rna-NM_001178383.1_Bruggeman | cds-NP_009591.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:293118-293804:- | gene-YBR035C_CAT1 | rna-NM_001178383.1_CAT1 | cds-NP_009591.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:280997-281683:- | gene-YBR035C_CBS1585 | rna-NM_001178383.1_CBS1585 | cds-NP_009591.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:289004-289690:- | gene-YBR035C_CBS436 | rna-NM_001178383.1_CBS436 | cds-NP_009591.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:378880-379566:- | gene-YBR035C_CBS6412 | rna-NM_001178383.1_CBS6412 | cds-NP_009591.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:286113-286799:- | gene-YBR035C_CBS6413 | rna-NM_001178383.1_CBS6413 | cds-NP_009591.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:300037-300723:- | gene-YBR035C_CENPK1137D | rna-NM_001178383.1_CENPK1137D | cds-NP_009591.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:415478-416164:- | gene-YBR035C_EthanolRed | rna-NM_001178383.1_EthanolRed | cds-NP_009591.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:304328-305014:- | gene-YBR035C_FaliES1 | rna-NM_001178383.1_FaliES1 | cds-NP_009591.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000441.1:26709-27395:+ | gene-YBR035C_JAY291 | rna-NM_001178383.1_JAY291 | cds-NP_009591.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:291030-291716:- | gene-YBR035C_MUCL30387 | rna-NM_001178383.1_MUCL30387 | cds-NP_009591.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:290833-291519:- | gene-YBR035C_MUCL30388 | rna-NM_001178383.1_MUCL30388 | cds-NP_009591.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:280985-281671:- | gene-YBR035C_MUCL39482 | rna-NM_001178383.1_MUCL39482 | cds-NP_009591.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:288179-288865:- | gene-YBR035C_MUCL42920 | rna-NM_001178383.1_MUCL42920 | cds-NP_009591.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:306066-306752:- | gene-YBR035C_NCIM3186 | rna-NM_001178383.1_NCIM3186 | cds-NP_009591.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:281898-282584:- | gene-YBR035C_NCYC1407 | rna-NM_001178383.1_NCYC1407 | cds-NP_009591.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:294068-294754:- | gene-YBR035C_PE2H3 | rna-NM_001178383.1_PE2H3 | cds-NP_009591.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:291744-292430:- | gene-YBR035C_PE2H4 | rna-NM_001178383.1_PE2H4 | cds-NP_009591.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:306269-306955:- | gene-YBR035C_S288C | rna-NM_001178383.1_S288C | cds-NP_009591.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:170592-171278:+ | gene-YBR035C_SA1 | rna-NM_001178383.1_SA1 | cds-NP_009591.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:303768-304454:- | gene-YBR035C_ThermosaccDry | rna-NM_001178383.1_ThermosaccDry | cds-NP_009591.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:285421-286107:- | gene-YBR035C_VR1 | rna-NM_001178383.1_VR1 | cds-NP_009591.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:279494-280180:- | gene-YBR035C_ZTW1 | rna-NM_001178383.1_ZTW1 | cds-NP_009591.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:315728-316414:- | gene-YBR035C_Sparadoxus | rna-NM_001178383.1_Sparadoxus | cds-NP_009591.1_Sparadoxus | 91.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |