PDR16 (YNL231C)


Gene profile

Gene name: PDR16
Reference locus (S288C): YNL231C
Gene biotype: protein_coding

Description: Phosphatidylinositol transfer protein (PITP); controlled by the multiple drug resistance regulator Pdr1p; localizes to lipid particles and microsomes; controls levels of various lipids, may regulate lipid synthesis; homologous to Pdr17p; protein abundance increases in response to DNA replication stress

Top 10 interactors (score): SFH5 (0.885); PDR5 (0.824); ERG11 (0.782); YOR1 (0.773); PDR1 (0.751); TPO1 (0.747); PDX3 (0.747); SNQ2 (0.717); YNL108C (0.698); TPO3 (0.673); TDA6 (0.672); PDR3 (0.67); PDR12 (0.628); PDR15 (0.597); GPN3 (0.593); ICT1 (0.572); PET10 (0.57); YGR035C (0.565); SEC14 (0.543); SFK1 (0.536)

Homologues (species, bitscore): mospd2 (Danio rerio, 53.9); CG32407 (Drosophila melanogaster, 52.0); AT4G08690 (Arabidopsis thaliana, 116.3)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005308.1:209769-210824:- gene-YNL231C_AKU4011 rna-NM_001183069.1_AKU4011 cds-NP_014168.1_AKU4011 99.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000155.1:113714-114769:- gene-YNL231C_BG1 rna-NM_001183069.1_BG1 cds-NP_014168.1_BG1 99.9 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:219820-220875:- gene-YNL231C_Bruggeman rna-NM_001183069.1_Bruggeman cds-NP_014168.1_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:226972-228027:- gene-YNL231C_CAT1 rna-NM_001183069.1_CAT1 cds-NP_014168.1_CAT1 99.9 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005372.1:210166-211221:- gene-YNL231C_CBS1585 rna-NM_001183069.1_CBS1585 cds-NP_014168.1_CBS1585 99.8 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005356.1:205252-206307:- gene-YNL231C_CBS436 rna-NM_001183069.1_CBS436 cds-NP_014168.1_CBS436 99.9 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005340.1:206200-207255:- gene-YNL231C_CBS6412 rna-NM_001183069.1_CBS6412 cds-NP_014168.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005324.1:206848-207903:- gene-YNL231C_CBS6413 rna-NM_001183069.1_CBS6413 cds-NP_014168.1_CBS6413 99.7 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001535.1:209798-210853:- gene-YNL231C_CENPK1137D rna-NM_001183069.1_CENPK1137D cds-NP_014168.1_CENPK1137D 99.7 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005484.1:207419-208474:- gene-YNL231C_EthanolRed rna-NM_001183069.1_EthanolRed cds-NP_014168.1_EthanolRed 99.7 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005548.1:202161-203216:- gene-YNL231C_FaliES1 rna-NM_001183069.1_FaliES1 cds-NP_014168.1_FaliES1 99.7 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000082.1:113302-114357:- gene-YNL231C_JAY291 rna-NM_001183069.1_JAY291 cds-NP_014168.1_JAY291 99.9 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005420.1:215354-216409:- gene-YNL231C_MUCL30387 rna-NM_001183069.1_MUCL30387 cds-NP_014168.1_MUCL30387 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005452.1:213939-214994:- gene-YNL231C_MUCL30388 rna-NM_001183069.1_MUCL30388 cds-NP_014168.1_MUCL30388 99.8 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005292.1:207656-208711:- gene-YNL231C_MUCL39482 rna-NM_001183069.1_MUCL39482 cds-NP_014168.1_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005436.1:209911-210966:- gene-YNL231C_MUCL42920 rna-NM_001183069.1_MUCL42920 cds-NP_014168.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:215956-217011:- gene-YNL231C_NCIM3186 rna-NM_001183069.1_NCIM3186 cds-NP_014168.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005276.1:209747-210802:- gene-YNL231C_NCYC1407 rna-NM_001183069.1_NCYC1407 cds-NP_014168.1_NCYC1407 99.7 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994153.1:206645-207700:- gene-YNL231C_PE2H3 rna-NM_001183069.1_PE2H3 cds-NP_014168.1_PE2H3 99.9 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:206033-207088:- gene-YNL231C_PE2H4 rna-NM_001183069.1_PE2H4 cds-NP_014168.1_PE2H4 99.9 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:215987-217042:- gene-YNL231C_S288C rna-NM_001183069.1_S288C cds-NP_014168.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000040.1:35258-36313:+ gene-YNL231C_SA1 rna-NM_001183069.1_SA1 cds-NP_014168.1_SA1 99.9 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005500.1:203017-204072:- gene-YNL231C_ThermosaccDry rna-NM_001183069.1_ThermosaccDry cds-NP_014168.1_ThermosaccDry 99.7 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:222005-223060:- gene-YNL231C_VR1 rna-NM_001183069.1_VR1 cds-NP_014168.1_VR1 99.8 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000030.1:113335-114390:- gene-YNL231C_ZTW1 rna-NM_001183069.1_ZTW1 cds-NP_014168.1_ZTW1 99.7 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047500.1:213378-214430:- gene-YNL231C_Sparadoxus rna-NM_001183069.1_Sparadoxus cds-NP_014168.1_Sparadoxus 91.7 99.7 Verified 1 1 1 False True False False False

Additional files