Gene name: PDP3
Reference locus (S288C): YLR455W
Gene biotype: protein_coding
Description: PWWP domain-containing protein YLR455W; Component of the NuA3b histone acetyltransferase complex; regulates interaction between NuA3b and H3K36me3 at the transcribed regions of genes; contains PWWP domain; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): YNG1 (0.996); SAS3 (0.991); TAF14 (0.988); EAF6 (0.983); NTO1 (0.983); SDH8 (0.813); YTA7 (0.796); INO80 (0.78); YDL199C (0.778); YCR087C-A (0.76); OSW5 (0.717); HHT1 (0.699); TSR3 (0.697); RGI1 (0.694); BRX1 (0.685); NOC2 (0.684); PWP1 (0.681); ATP14 (0.675); HHF1 (0.669); HTB1 (0.663)
Homologues (species, bitscore): AT5G27650 (Arabidopsis thaliana, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:991913-992827:+ | gene-YLR455W_AKU4011 | rna-NM_001182343.3_AKU4011 | cds-NP_013560.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000002.1:4936-5850:- | gene-YLR455W_BG1 | rna-NM_001182343.3_BG1 | cds-NP_013560.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:1031505-1032419:+ | gene-YLR455W_Bruggeman | rna-NM_001182343.3_Bruggeman | cds-NP_013560.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:1026555-1027469:+ | gene-YLR455W_CAT1 | rna-NM_001182343.3_CAT1 | cds-NP_013560.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:1027504-1028418:+ | gene-YLR455W_CBS1585 | rna-NM_001182343.3_CBS1585 | cds-NP_013560.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:1017148-1018062:+ | gene-YLR455W_CBS436 | rna-NM_001182343.3_CBS436 | cds-NP_013560.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1063533-1064447:+ | gene-YLR455W_CBS6412 | rna-NM_001182343.3_CBS6412 | cds-NP_013560.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:1028273-1029187:+ | gene-YLR455W_CBS6413 | rna-NM_001182343.3_CBS6413 | cds-NP_013560.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1038259-1039173:+ | gene-YLR455W_CENPK1137D | rna-NM_001182343.3_CENPK1137D | cds-NP_013560.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:984930-985844:+ | gene-YLR455W_EthanolRed | rna-NM_001182343.3_EthanolRed | cds-NP_013560.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:1020201-1021115:+ | gene-YLR455W_FaliES1 | rna-NM_001182343.3_FaliES1 | cds-NP_013560.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000300.1:4813-5727:- | gene-YLR455W_JAY291 | rna-NM_001182343.3_JAY291 | cds-NP_013560.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:1030986-1031900:+ | gene-YLR455W_MUCL30387 | rna-NM_001182343.3_MUCL30387 | cds-NP_013560.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1038898-1039812:+ | gene-YLR455W_MUCL30388 | rna-NM_001182343.3_MUCL30388 | cds-NP_013560.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:1028738-1029652:+ | gene-YLR455W_MUCL39482 | rna-NM_001182343.3_MUCL39482 | cds-NP_013560.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:1029189-1030103:+ | gene-YLR455W_MUCL42920 | rna-NM_001182343.3_MUCL42920 | cds-NP_013560.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1053603-1054517:+ | gene-YLR455W_NCIM3186 | rna-NM_001182343.3_NCIM3186 | cds-NP_013560.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1038174-1039088:+ | gene-YLR455W_NCYC1407 | rna-NM_001182343.3_NCYC1407 | cds-NP_013560.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:1030870-1031784:+ | gene-YLR455W_PE2H3 | rna-NM_001182343.3_PE2H3 | cds-NP_013560.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:1030614-1031528:+ | gene-YLR455W_PE2H4 | rna-NM_001182343.3_PE2H4 | cds-NP_013560.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1053629-1054543:+ | gene-YLR455W_S288C | rna-NM_001182343.3_S288C | cds-NP_013560.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:4942-5856:- | gene-YLR455W_SA1 | rna-NM_001182343.3_SA1 | cds-NP_013560.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:1023279-1024193:+ | gene-YLR455W_ThermosaccDry | rna-NM_001182343.3_ThermosaccDry | cds-NP_013560.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1030021-1030935:+ | gene-YLR455W_VR1 | rna-NM_001182343.3_VR1 | cds-NP_013560.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:353533-354447:+ | gene-YLR455W_ZTW1 | rna-NM_001182343.3_ZTW1 | cds-NP_013560.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:1003597-1004511:+ | gene-YLR455W_Sparadoxus | rna-NM_001182343.3_Sparadoxus | cds-NP_013560.3_Sparadoxus | 87.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |