Gene name: PDH1
Reference locus (S288C): YPR002W
Gene biotype: protein_coding
Description: Putative 2-methylcitrate dehydratase; mitochondrial protein that participates in respiration; induced by diauxic shift; homologous to E. coli PrpD, may take part in the conversion of 2-methylcitrate to 2-methylisocitrate
Top 10 interactors (score): CIT3 (0.987); ICL2 (0.928); ICL1 (0.82); PDR5 (0.748); PDR1 (0.745); CAT2 (0.745); NPC2 (0.721); CIT2 (0.7); YOR1 (0.699); SNQ2 (0.698); RTA1 (0.697); ERG11 (0.696); CIT1 (0.675); RSB1 (0.671); PDR3 (0.671); ACS1 (0.622); ATF2 (0.615); PUP1 (0.595); IDP2 (0.567); AUS1 (0.526)
Homologues (species, bitscore): Irg1 (Mus musculus, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:529848-531398:+ | gene-YPR002W_AKU4011 | rna-NM_001184099.1_AKU4011 | cds-NP_015326.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:365782-367332:- | gene-YPR002W_BG1 | rna-NM_001184099.1_BG1 | cds-NP_015326.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:606784-608334:+ | gene-YPR002W_Bruggeman | rna-NM_001184099.1_Bruggeman | cds-NP_015326.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:649528-651078:+ | gene-YPR002W_CAT1 | rna-NM_001184099.1_CAT1 | cds-NP_015326.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:534025-535575:+ | gene-YPR002W_CBS1585 | rna-NM_001184099.1_CBS1585 | cds-NP_015326.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:548108-549658:+ | gene-YPR002W_CBS436 | rna-NM_001184099.1_CBS436 | cds-NP_015326.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:537774-539324:+ | gene-YPR002W_CBS6412 | rna-NM_001184099.1_CBS6412 | cds-NP_015326.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:530485-532035:+ | gene-YPR002W_CBS6413 | rna-NM_001184099.1_CBS6413 | cds-NP_015326.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:558384-559934:+ | gene-YPR002W_CENPK1137D | rna-NM_001184099.1_CENPK1137D | cds-NP_015326.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:528272-529822:+ | gene-YPR002W_EthanolRed | rna-NM_001184099.1_EthanolRed | cds-NP_015326.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:536102-537652:+ | gene-YPR002W_FaliES1 | rna-NM_001184099.1_FaliES1 | cds-NP_015326.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000341.1:366-1916:- | gene-YPR002W_JAY291 | rna-NM_001184099.1_JAY291 | cds-NP_015326.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:547739-549289:+ | gene-YPR002W_MUCL30387 | rna-NM_001184099.1_MUCL30387 | cds-NP_015326.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:546841-548391:+ | gene-YPR002W_MUCL30388 | rna-NM_001184099.1_MUCL30388 | cds-NP_015326.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:527265-528815:+ | gene-YPR002W_MUCL39482 | rna-NM_001184099.1_MUCL39482 | cds-NP_015326.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:586355-587905:+ | gene-YPR002W_MUCL42920 | rna-NM_001184099.1_MUCL42920 | cds-NP_015326.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:558368-559918:+ | gene-YPR002W_NCIM3186 | rna-NM_001184099.1_NCIM3186 | cds-NP_015326.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:534525-536075:+ | gene-YPR002W_NCYC1407 | rna-NM_001184099.1_NCYC1407 | cds-NP_015326.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:541217-542767:+ | gene-YPR002W_PE2H3 | rna-NM_001184099.1_PE2H3 | cds-NP_015326.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:540832-542382:+ | gene-YPR002W_PE2H4 | rna-NM_001184099.1_PE2H4 | cds-NP_015326.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:558385-559935:+ | gene-YPR002W_S288C | rna-NM_001184099.1_S288C | cds-NP_015326.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:55126-56676:+ | gene-YPR002W_SA1 | rna-NM_001184099.1_SA1 | cds-NP_015326.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:535901-537451:+ | gene-YPR002W_ThermosaccDry | rna-NM_001184099.1_ThermosaccDry | cds-NP_015326.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:551301-552851:+ | gene-YPR002W_VR1 | rna-NM_001184099.1_VR1 | cds-NP_015326.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:535206-536756:+ | gene-YPR002W_ZTW1 | rna-NM_001184099.1_ZTW1 | cds-NP_015326.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:534885-536435:+ | gene-YPR002W_Sparadoxus | rna-NM_001184099.1_Sparadoxus | cds-NP_015326.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |