Gene name: PDE1
Reference locus (S288C): YGL248W
Gene biotype: protein_coding
Description: 3',5'-cyclic-nucleotide phosphodiesterase 1; Low-affinity cyclic AMP phosphodiesterase; controls glucose and intracellular acidification-induced cAMP signaling, target of the cAMP-protein kinase A (PKA) pathway; glucose induces transcription and inhibits translation
Top 10 interactors (score): PDE2 (0.999); CYR1 (0.996); BCY1 (0.961); GPA2 (0.935); TPK1 (0.907); AMD1 (0.903); HAM1 (0.903); YND1 (0.9); ADO1 (0.9); FAP7 (0.9); ADK2 (0.9); ADK1 (0.9); HPT1 (0.9); ADE13 (0.9); APT1 (0.9); GUA1 (0.9); GUK1 (0.9); IRA2 (0.9); APT2 (0.9); TPK2 (0.883)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:37178-38287:+ | gene-YGL248W_AKU4011 | rna-NM_001181114.1_AKU4011 | cds-NP_011266.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:29217-30326:+ | gene-YGL248W_BG1 | rna-NM_001181114.1_BG1 | cds-NP_011266.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:37533-38642:+ | gene-YGL248W_Bruggeman | rna-NM_001181114.1_Bruggeman | cds-NP_011266.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:35605-36714:+ | gene-YGL248W_CAT1 | rna-NM_001181114.1_CAT1 | cds-NP_011266.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:41466-42575:+ | gene-YGL248W_CBS1585 | rna-NM_001181114.1_CBS1585 | cds-NP_011266.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:36194-37303:+ | gene-YGL248W_CBS436 | rna-NM_001181114.1_CBS436 | cds-NP_011266.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:29034-30143:+ | gene-YGL248W_CBS6412 | rna-NM_001181114.1_CBS6412 | cds-NP_011266.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:35322-36431:+ | gene-YGL248W_CBS6413 | rna-NM_001181114.1_CBS6413 | cds-NP_011266.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:35315-36424:+ | gene-YGL248W_CENPK1137D | rna-NM_001181114.1_CENPK1137D | cds-NP_011266.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:28455-29564:+ | gene-YGL248W_EthanolRed | rna-NM_001181114.1_EthanolRed | cds-NP_011266.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:28816-29925:+ | gene-YGL248W_FaliES1 | rna-NM_001181114.1_FaliES1 | cds-NP_011266.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000079.1:37156-38265:- | gene-YGL248W_JAY291 | rna-NM_001181114.1_JAY291 | cds-NP_011266.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:37470-38579:+ | gene-YGL248W_MUCL30387 | rna-NM_001181114.1_MUCL30387 | cds-NP_011266.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:39623-40732:+ | gene-YGL248W_MUCL30388 | rna-NM_001181114.1_MUCL30388 | cds-NP_011266.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:38063-39172:+ | gene-YGL248W_MUCL39482 | rna-NM_001181114.1_MUCL39482 | cds-NP_011266.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:40956-42065:+ | gene-YGL248W_MUCL42920 | rna-NM_001181114.1_MUCL42920 | cds-NP_011266.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:35653-36762:+ | gene-YGL248W_NCIM3186 | rna-NM_001181114.1_NCIM3186 | cds-NP_011266.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:29827-30936:+ | gene-YGL248W_NCYC1407 | rna-NM_001181114.1_NCYC1407 | cds-NP_011266.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:31683-32792:+ | gene-YGL248W_PE2H3 | rna-NM_001181114.1_PE2H3 | cds-NP_011266.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:31231-32340:+ | gene-YGL248W_PE2H4 | rna-NM_001181114.1_PE2H4 | cds-NP_011266.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:35653-36762:+ | gene-YGL248W_S288C | rna-NM_001181114.1_S288C | cds-NP_011266.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:338572-339681:- | gene-YGL248W_SA1 | rna-NM_001181114.1_SA1 | cds-NP_011266.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:29131-30240:+ | gene-YGL248W_ThermosaccDry | rna-NM_001181114.1_ThermosaccDry | cds-NP_011266.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:36120-37229:+ | gene-YGL248W_VR1 | rna-NM_001181114.1_VR1 | cds-NP_011266.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:28204-29313:+ | gene-YGL248W_ZTW1 | rna-NM_001181114.1_ZTW1 | cds-NP_011266.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:36876-37985:+ | gene-YGL248W_Sparadoxus | rna-NM_001181114.1_Sparadoxus | cds-NP_011266.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |