Gene name: PDB1
Reference locus (S288C): YBR221C
Gene biotype: protein_coding
Description: Pyruvate dehydrogenase e1 component subunit beta, mitochondrial; E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria
Top 10 interactors (score): PDX1 (0.999); LAT1 (0.999); PDA1 (0.999); LPD1 (0.999); IRC15 (0.998); KGD2 (0.992); ACO1 (0.99); CDC19 (0.986); LSC2 (0.98); LSC1 (0.979); PYC1 (0.978); MAE1 (0.978); PDC1 (0.976); CIT1 (0.975); PYK2 (0.974); KGD1 (0.97); CIT2 (0.967); TKL1 (0.967); FBA1 (0.965); PYC2 (0.962)
Homologues (species, bitscore): PDHB (Homo sapiens, 432.6); Pdhb (Mus musculus, 437.2); pdhb (Danio rerio, 444.1); pdhb (Xenopus tropicalis, 428.3); CG11876 (Drosophila melanogaster, 422.9); pdhb-1 (Caenorhabditis elegans, 449.5); MAB1 (Arabidopsis thaliana, 443.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:649459-650559:- | gene-YBR221C_AKU4011 | rna-NM_001178569.1_AKU4011 | cds-NP_009780.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:20380-21480:- | gene-YBR221C_BG1 | rna-NM_001178569.1_BG1 | cds-NP_009780.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:650614-651714:- | gene-YBR221C_Bruggeman | rna-NM_001178569.1_Bruggeman | cds-NP_009780.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:653819-654919:- | gene-YBR221C_CAT1 | rna-NM_001178569.1_CAT1 | cds-NP_009780.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:640991-642091:- | gene-YBR221C_CBS1585 | rna-NM_001178569.1_CBS1585 | cds-NP_009780.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:647416-648516:- | gene-YBR221C_CBS436 | rna-NM_001178569.1_CBS436 | cds-NP_009780.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:735968-737068:- | gene-YBR221C_CBS6412 | rna-NM_001178569.1_CBS6412 | cds-NP_009780.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:647029-648129:- | gene-YBR221C_CBS6413 | rna-NM_001178569.1_CBS6413 | cds-NP_009780.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:658933-660033:- | gene-YBR221C_CENPK1137D | rna-NM_001178569.1_CENPK1137D | cds-NP_009780.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:772704-773804:- | gene-YBR221C_EthanolRed | rna-NM_001178569.1_EthanolRed | cds-NP_009780.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:665811-666911:- | gene-YBR221C_FaliES1 | rna-NM_001178569.1_FaliES1 | cds-NP_009780.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:135444-136544:+ | gene-YBR221C_JAY291 | rna-NM_001178569.1_JAY291 | cds-NP_009780.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:652627-653727:- | gene-YBR221C_MUCL30387 | rna-NM_001178569.1_MUCL30387 | cds-NP_009780.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:669707-670807:- | gene-YBR221C_MUCL30388 | rna-NM_001178569.1_MUCL30388 | cds-NP_009780.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:639343-640443:- | gene-YBR221C_MUCL39482 | rna-NM_001178569.1_MUCL39482 | cds-NP_009780.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:649186-650286:- | gene-YBR221C_MUCL42920 | rna-NM_001178569.1_MUCL42920 | cds-NP_009780.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:664950-666050:- | gene-YBR221C_NCIM3186 | rna-NM_001178569.1_NCIM3186 | cds-NP_009780.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:641205-642305:- | gene-YBR221C_NCYC1407 | rna-NM_001178569.1_NCYC1407 | cds-NP_009780.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:664321-665421:- | gene-YBR221C_PE2H3 | rna-NM_001178569.1_PE2H3 | cds-NP_009780.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:661997-663097:- | gene-YBR221C_PE2H4 | rna-NM_001178569.1_PE2H4 | cds-NP_009780.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:665153-666253:- | gene-YBR221C_S288C | rna-NM_001178569.1_S288C | cds-NP_009780.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:20278-21378:- | gene-YBR221C_SA1 | rna-NM_001178569.1_SA1 | cds-NP_009780.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:664821-665921:- | gene-YBR221C_ThermosaccDry | rna-NM_001178569.1_ThermosaccDry | cds-NP_009780.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:644994-646094:- | gene-YBR221C_VR1 | rna-NM_001178569.1_VR1 | cds-NP_009780.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:637686-638786:- | gene-YBR221C_ZTW1 | rna-NM_001178569.1_ZTW1 | cds-NP_009780.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:681663-682760:- | gene-YBR221C_Sparadoxus | rna-NM_001178569.1_Sparadoxus | cds-NP_009780.1_Sparadoxus | 93.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |