Gene name: PCS60
Reference locus (S288C): YBR222C
Gene biotype: protein_coding
Description: Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; Belongs to the ATP-dependent AMP-binding enzyme family
Top 10 interactors (score): PXP1 (0.964); POT1 (0.933); POX1 (0.896); FAA2 (0.89); PEX5 (0.85); PEX3 (0.82); PCD1 (0.784); DCI1 (0.766); PEX6 (0.758); PEX14 (0.748); NPY1 (0.747); TES1 (0.716); PEX11 (0.712); FOX2 (0.674); MDH3 (0.651); ECI1 (0.63); PRE7 (0.613); PRD1 (0.606); PXA1 (0.603); ACP1 (0.603)
Homologues (species, bitscore): ACSF3 (Homo sapiens, 169.1); Acsf3 (Mus musculus, 161.8); LOC562292 (Danio rerio, 163.7); acsf2 (Xenopus tropicalis, 151.0); pdgy (Drosophila melanogaster, 189.5); acs-21 (Caenorhabditis elegans, 166.0); AAE3 (Arabidopsis thaliana, 403.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:651026-652657:- | gene-YBR222C_AKU4011 | rna-NM_001178570.3_AKU4011 | cds-NP_009781.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:21947-23578:- | gene-YBR222C_BG1 | rna-NM_001178570.3_BG1 | cds-NP_009781.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:652181-653812:- | gene-YBR222C_Bruggeman | rna-NM_001178570.3_Bruggeman | cds-NP_009781.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:655386-657017:- | gene-YBR222C_CAT1 | rna-NM_001178570.3_CAT1 | cds-NP_009781.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:642558-644189:- | gene-YBR222C_CBS1585 | rna-NM_001178570.3_CBS1585 | cds-NP_009781.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:648983-650614:- | gene-YBR222C_CBS436 | rna-NM_001178570.3_CBS436 | cds-NP_009781.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:737535-739166:- | gene-YBR222C_CBS6412 | rna-NM_001178570.3_CBS6412 | cds-NP_009781.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:648596-650227:- | gene-YBR222C_CBS6413 | rna-NM_001178570.3_CBS6413 | cds-NP_009781.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:660500-662131:- | gene-YBR222C_CENPK1137D | rna-NM_001178570.3_CENPK1137D | cds-NP_009781.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:774271-775902:- | gene-YBR222C_EthanolRed | rna-NM_001178570.3_EthanolRed | cds-NP_009781.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:667378-669009:- | gene-YBR222C_FaliES1 | rna-NM_001178570.3_FaliES1 | cds-NP_009781.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:133346-134977:+ | gene-YBR222C_JAY291 | rna-NM_001178570.3_JAY291 | cds-NP_009781.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:654194-655825:- | gene-YBR222C_MUCL30387 | rna-NM_001178570.3_MUCL30387 | cds-NP_009781.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:671274-672905:- | gene-YBR222C_MUCL30388 | rna-NM_001178570.3_MUCL30388 | cds-NP_009781.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:640910-642541:- | gene-YBR222C_MUCL39482 | rna-NM_001178570.3_MUCL39482 | cds-NP_009781.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:650753-652384:- | gene-YBR222C_MUCL42920 | rna-NM_001178570.3_MUCL42920 | cds-NP_009781.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:666517-668148:- | gene-YBR222C_NCIM3186 | rna-NM_001178570.3_NCIM3186 | cds-NP_009781.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:642772-644403:- | gene-YBR222C_NCYC1407 | rna-NM_001178570.3_NCYC1407 | cds-NP_009781.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:665888-667519:- | gene-YBR222C_PE2H3 | rna-NM_001178570.3_PE2H3 | cds-NP_009781.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:663564-665195:- | gene-YBR222C_PE2H4 | rna-NM_001178570.3_PE2H4 | cds-NP_009781.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:666720-668351:- | gene-YBR222C_S288C | rna-NM_001178570.3_S288C | cds-NP_009781.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:21845-23476:- | gene-YBR222C_SA1 | rna-NM_001178570.3_SA1 | cds-NP_009781.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:666388-668019:- | gene-YBR222C_ThermosaccDry | rna-NM_001178570.3_ThermosaccDry | cds-NP_009781.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:646561-648192:- | gene-YBR222C_VR1 | rna-NM_001178570.3_VR1 | cds-NP_009781.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:639253-640884:- | gene-YBR222C_ZTW1 | rna-NM_001178570.3_ZTW1 | cds-NP_009781.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:683224-684855:- | gene-YBR222C_Sparadoxus | rna-NM_001178570.3_Sparadoxus | cds-NP_009781.3_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |