Gene name: PCL9
Reference locus (S288C): YDL179W
Gene biotype: protein_coding
Description: PHO85 cyclin-9; Cyclin; forms a functional kinase complex with Pho85p cyclin-dependent kinase (Cdk), expressed in late M/early G1 phase, activated by Swi5p; PCL9 has a paralog, PCL2, that arose from the whole genome duplication; Belongs to the cyclin family. PCL1,2 subfamily
Top 10 interactors (score): PHO85 (0.991); PCL6 (0.944); PCL5 (0.937); CLG1 (0.936); PCL7 (0.935); PCL10 (0.931); PCL8 (0.929); CDC28 (0.926); PHO80 (0.925); CLB1 (0.898); PCL1 (0.833); PCL2 (0.813); CLN3 (0.797); CTK2 (0.785); CLN2 (0.777); CKS1 (0.731); SGV1 (0.72); CTK3 (0.72); BUR2 (0.72); CTK1 (0.72)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:122717-123631:+ | gene-YDL179W_AKU4011 | rna-NM_001180239.1_AKU4011 | cds-NP_010102.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:426078-426992:- | gene-YDL179W_BG1 | rna-NM_001180239.1_BG1 | cds-NP_010102.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:138771-139685:+ | gene-YDL179W_Bruggeman | rna-NM_001180239.1_Bruggeman | cds-NP_010102.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:137099-138013:+ | gene-YDL179W_CAT1 | rna-NM_001180239.1_CAT1 | cds-NP_010102.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:120755-121669:+ | gene-YDL179W_CBS1585 | rna-NM_001180239.1_CBS1585 | cds-NP_010102.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:137716-138630:+ | gene-YDL179W_CBS436 | rna-NM_001180239.1_CBS436 | cds-NP_010102.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:120318-121232:+ | gene-YDL179W_CBS6412 | rna-NM_001180239.1_CBS6412 | cds-NP_010102.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:139129-140043:+ | gene-YDL179W_CBS6413 | rna-NM_001180239.1_CBS6413 | cds-NP_010102.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:136964-137878:+ | gene-YDL179W_CENPK1137D | rna-NM_001180239.1_CENPK1137D | cds-NP_010102.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:134137-135051:+ | gene-YDL179W_EthanolRed | rna-NM_001180239.1_EthanolRed | cds-NP_010102.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:139463-140377:+ | gene-YDL179W_FaliES1 | rna-NM_001180239.1_FaliES1 | cds-NP_010102.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:79132-80046:- | gene-YDL179W_JAY291 | rna-NM_001180239.1_JAY291 | cds-NP_010102.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:137077-137991:+ | gene-YDL179W_MUCL30387 | rna-NM_001180239.1_MUCL30387 | cds-NP_010102.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:128722-129636:+ | gene-YDL179W_MUCL30388 | rna-NM_001180239.1_MUCL30388 | cds-NP_010102.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:121897-122811:+ | gene-YDL179W_MUCL39482 | rna-NM_001180239.1_MUCL39482 | cds-NP_010102.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000307.1:46558-47472:- | gene-YDL179W_MUCL42920 | rna-NM_001180239.1_MUCL42920 | cds-NP_010102.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:138214-139128:+ | gene-YDL179W_NCIM3186 | rna-NM_001180239.1_NCIM3186 | cds-NP_010102.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:121786-122700:+ | gene-YDL179W_NCYC1407 | rna-NM_001180239.1_NCYC1407 | cds-NP_010102.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:129097-130011:+ | gene-YDL179W_PE2H3 | rna-NM_001180239.1_PE2H3 | cds-NP_010102.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:129101-130015:+ | gene-YDL179W_PE2H4 | rna-NM_001180239.1_PE2H4 | cds-NP_010102.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:138291-139205:+ | gene-YDL179W_S288C | rna-NM_001180239.1_S288C | cds-NP_010102.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:3874-4788:+ | gene-YDL179W_SA1 | rna-NM_001180239.1_SA1 | cds-NP_010102.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:139223-140137:+ | gene-YDL179W_ThermosaccDry | rna-NM_001180239.1_ThermosaccDry | cds-NP_010102.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:139868-140782:+ | gene-YDL179W_VR1 | rna-NM_001180239.1_VR1 | cds-NP_010102.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:137396-138310:+ | gene-YDL179W_ZTW1 | rna-NM_001180239.1_ZTW1 | cds-NP_010102.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:139632-140546:+ | gene-YDL179W_Sparadoxus | rna-NM_001180239.1_Sparadoxus | cds-NP_010102.1_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |