Gene name: PCI8
Reference locus (S288C): YIL071C
Gene biotype: protein_coding
Description: COP9 signalosome complex subunit 11; Possible shared subunit of Cop9 signalosome (CSN) and eIF3; binds eIF3b subunit Prt1p, has possible dual functions in transcriptional and translational control, contains a PCI (Proteasome-COP9 signalosome (CSN)-eIF3) domain
Top 10 interactors (score): CSN9 (0.998); RRI2 (0.997); CSI1 (0.997); RRI1 (0.996); RPN5 (0.992); YJR084W (0.874); YDR131C (0.744); CTR1 (0.711); HEL1 (0.696); RNP1 (0.671); YER135C (0.654); THP3 (0.618); SGN1 (0.574); CLU1 (0.57); STP3 (0.525); YEL1 (0.525); YMR310C (0.522); SKP1 (0.497); MUK1 (0.487); GTO3 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:225329-226663:- | gene-YIL071C_AKU4011 | rna-NM_001179421.3_AKU4011 | cds-NP_085069.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:87261-88595:- | gene-YIL071C_BG1 | rna-NM_001179421.3_BG1 | cds-NP_085069.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:230744-232078:- | gene-YIL071C_Bruggeman | rna-NM_001179421.3_Bruggeman | cds-NP_085069.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:221023-222357:- | gene-YIL071C_CAT1 | rna-NM_001179421.3_CAT1 | cds-NP_085069.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:224900-226234:- | gene-YIL071C_CBS1585 | rna-NM_001179421.3_CBS1585 | cds-NP_085069.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:220951-222285:- | gene-YIL071C_CBS436 | rna-NM_001179421.3_CBS436 | cds-NP_085069.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:222277-223611:- | gene-YIL071C_CBS6412 | rna-NM_001179421.3_CBS6412 | cds-NP_085069.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:216820-218154:- | gene-YIL071C_CBS6413 | rna-NM_001179421.3_CBS6413 | cds-NP_085069.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:220364-221698:- | gene-YIL071C_CENPK1137D | rna-NM_001179421.3_CENPK1137D | cds-NP_085069.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:209625-210959:- | gene-YIL071C_EthanolRed | rna-NM_001179421.3_EthanolRed | cds-NP_085069.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:226533-227867:- | gene-YIL071C_FaliES1 | rna-NM_001179421.3_FaliES1 | cds-NP_085069.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:1645-2979:+ | gene-YIL071C_JAY291 | rna-NM_001179421.3_JAY291 | cds-NP_085069.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:228964-230298:- | gene-YIL071C_MUCL30387 | rna-NM_001179421.3_MUCL30387 | cds-NP_085069.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:225573-226907:- | gene-YIL071C_MUCL30388 | rna-NM_001179421.3_MUCL30388 | cds-NP_085069.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:225747-227081:- | gene-YIL071C_MUCL39482 | rna-NM_001179421.3_MUCL39482 | cds-NP_085069.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:229111-230445:- | gene-YIL071C_MUCL42920 | rna-NM_001179421.3_MUCL42920 | cds-NP_085069.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:228660-229994:- | gene-YIL071C_NCIM3186 | rna-NM_001179421.3_NCIM3186 | cds-NP_085069.3_NCIM3186 | 95.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:230024-231358:- | gene-YIL071C_NCYC1407 | rna-NM_001179421.3_NCYC1407 | cds-NP_085069.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:224005-225339:- | gene-YIL071C_PE2H3 | rna-NM_001179421.3_PE2H3 | cds-NP_085069.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:218722-220056:- | gene-YIL071C_PE2H4 | rna-NM_001179421.3_PE2H4 | cds-NP_085069.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:228660-229994:- | gene-YIL071C_S288C | rna-NM_001179421.3_S288C | cds-NP_085069.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:95840-97174:+ | gene-YIL071C_SA1 | rna-NM_001179421.3_SA1 | cds-NP_085069.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:225197-226531:- | gene-YIL071C_ThermosaccDry | rna-NM_001179421.3_ThermosaccDry | cds-NP_085069.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:222880-224214:- | gene-YIL071C_VR1 | rna-NM_001179421.3_VR1 | cds-NP_085069.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:199459-200793:- | gene-YIL071C_ZTW1 | rna-NM_001179421.3_ZTW1 | cds-NP_085069.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:223607-224941:- | gene-YIL071C_Sparadoxus | rna-NM_001179421.3_Sparadoxus | cds-NP_085069.3_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |