Gene name: PCD1
Reference locus (S288C): YLR151C
Gene biotype: protein_coding
Description: Peroxisomal coenzyme A diphosphatase 1, peroxisomal; 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1
Top 10 interactors (score): MAS2 (0.962); NPY1 (0.96); POX1 (0.938); TES1 (0.937); YSA1 (0.936); FOX2 (0.933); CAT2 (0.911); SPS19 (0.911); FMS1 (0.905); CTT1 (0.904); FAT1 (0.903); PXP1 (0.903); STE23 (0.902); NCP1 (0.9); IDP2 (0.9); DDP1 (0.86); PCS60 (0.784); YLR149C (0.77); YLR152C (0.766); YJR142W (0.745)
Homologues (species, bitscore): NUDT7 (Homo sapiens, 57.0); Nudt7 (Mus musculus, 51.6); NUDT7 (Danio rerio, 60.8); CG11095 (Drosophila melanogaster, 58.5); ndx-3 (Caenorhabditis elegans, 50.4); NUDX15 (Arabidopsis thaliana, 87.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:424195-425217:- | gene-YLR151C_AKU4011 | rna-NM_001182038.1_AKU4011 | cds-NP_013252.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:387966-388988:- | gene-YLR151C_BG1 | rna-NM_001182038.1_BG1 | cds-NP_013252.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:436091-437113:- | gene-YLR151C_Bruggeman | rna-NM_001182038.1_Bruggeman | cds-NP_013252.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:435475-436497:- | gene-YLR151C_CAT1 | rna-NM_001182038.1_CAT1 | cds-NP_013252.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:431338-432360:- | gene-YLR151C_CBS1585 | rna-NM_001182038.1_CBS1585 | cds-NP_013252.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:421576-422598:- | gene-YLR151C_CBS436 | rna-NM_001182038.1_CBS436 | cds-NP_013252.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:429756-430778:- | gene-YLR151C_CBS6412 | rna-NM_001182038.1_CBS6412 | cds-NP_013252.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:431603-432625:- | gene-YLR151C_CBS6413 | rna-NM_001182038.1_CBS6413 | cds-NP_013252.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:426733-427755:- | gene-YLR151C_CENPK1137D | rna-NM_001182038.1_CENPK1137D | cds-NP_013252.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:424396-425418:- | gene-YLR151C_EthanolRed | rna-NM_001182038.1_EthanolRed | cds-NP_013252.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:423907-424929:- | gene-YLR151C_FaliES1 | rna-NM_001182038.1_FaliES1 | cds-NP_013252.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:30566-31588:- | gene-YLR151C_JAY291 | rna-NM_001182038.1_JAY291 | cds-NP_013252.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:436096-437118:- | gene-YLR151C_MUCL30387 | rna-NM_001182038.1_MUCL30387 | cds-NP_013252.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:440897-441919:- | gene-YLR151C_MUCL30388 | rna-NM_001182038.1_MUCL30388 | cds-NP_013252.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:431847-432869:- | gene-YLR151C_MUCL39482 | rna-NM_001182038.1_MUCL39482 | cds-NP_013252.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:432001-433023:- | gene-YLR151C_MUCL42920 | rna-NM_001182038.1_MUCL42920 | cds-NP_013252.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:441689-442711:- | gene-YLR151C_NCIM3186 | rna-NM_001182038.1_NCIM3186 | cds-NP_013252.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:424119-425141:- | gene-YLR151C_NCYC1407 | rna-NM_001182038.1_NCYC1407 | cds-NP_013252.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:429677-430699:- | gene-YLR151C_PE2H3 | rna-NM_001182038.1_PE2H3 | cds-NP_013252.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:429418-430440:- | gene-YLR151C_PE2H4 | rna-NM_001182038.1_PE2H4 | cds-NP_013252.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:441715-442737:- | gene-YLR151C_S288C | rna-NM_001182038.1_S288C | cds-NP_013252.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:67613-68635:- | gene-YLR151C_SA1 | rna-NM_001182038.1_SA1 | cds-NP_013252.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:425117-426139:- | gene-YLR151C_ThermosaccDry | rna-NM_001182038.1_ThermosaccDry | cds-NP_013252.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:437815-438837:- | gene-YLR151C_VR1 | rna-NM_001182038.1_VR1 | cds-NP_013252.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:422903-423925:- | gene-YLR151C_ZTW1 | rna-NM_001182038.1_ZTW1 | cds-NP_013252.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:433083-434105:- | gene-YLR151C_Sparadoxus | rna-NM_001182038.1_Sparadoxus | cds-NP_013252.1_Sparadoxus | 89.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |