Gene name: PBY1
Reference locus (S288C): YBR094W
Gene biotype: protein_coding
Description: Probable tubulin--tyrosine ligase PBY1; Putative tubulin tyrosine ligase associated with P-bodies; may have a role in mRNA metabolism; yeast knockout collection strain identified as a pby1 null mutant is actually wild-type for PBY1 and deleted for mms4; Belongs to the tubulin--tyrosine ligase family
Top 10 interactors (score): DCP1 (0.982); EDC3 (0.981); PMC1 (0.907); POP4 (0.893); DCP2 (0.841); ESC2 (0.732); LSM4 (0.714); GPN3 (0.708); AIM22 (0.7); DIA3 (0.696); FMP16 (0.675); RNH202 (0.652); SRB7 (0.649); DPB4 (0.642); YKL071W (0.611); TUB2 (0.607); PSP2 (0.594); PWP1 (0.582); DIA2 (0.581); SMC6 (0.557)
Homologues (species, bitscore): TTL (Homo sapiens, 72.4); Ttll10 (Mus musculus, 73.6); ttl (Danio rerio, 71.2); ttl (Xenopus tropicalis, 68.9); TTLL3B (Drosophila melanogaster, 64.7); ttll-9 (Caenorhabditis elegans, 58.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:414401-416662:+ | gene-YBR094W_AKU4011 | rna-NM_001178442.2_AKU4011 | cds-NP_009652.2_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:405441-407702:+ | gene-YBR094W_BG1 | rna-NM_001178442.2_BG1 | cds-NP_009652.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:416178-418439:+ | gene-YBR094W_Bruggeman | rna-NM_001178442.2_Bruggeman | cds-NP_009652.2_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:418951-421212:+ | gene-YBR094W_CAT1 | rna-NM_001178442.2_CAT1 | cds-NP_009652.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:406686-408947:+ | gene-YBR094W_CBS1585 | rna-NM_001178442.2_CBS1585 | cds-NP_009652.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:414806-417067:+ | gene-YBR094W_CBS436 | rna-NM_001178442.2_CBS436 | cds-NP_009652.2_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:504915-507176:+ | gene-YBR094W_CBS6412 | rna-NM_001178442.2_CBS6412 | cds-NP_009652.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:411826-414087:+ | gene-YBR094W_CBS6413 | rna-NM_001178442.2_CBS6413 | cds-NP_009652.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:423938-426199:+ | gene-YBR094W_CENPK1137D | rna-NM_001178442.2_CENPK1137D | cds-NP_009652.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:541196-543457:+ | gene-YBR094W_EthanolRed | rna-NM_001178442.2_EthanolRed | cds-NP_009652.2_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:430479-432740:+ | gene-YBR094W_FaliES1 | rna-NM_001178442.2_FaliES1 | cds-NP_009652.2_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:1380-3641:+ | gene-YBR094W_JAY291 | rna-NM_001178442.2_JAY291 | cds-NP_009652.2_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:418212-420473:+ | gene-YBR094W_MUCL30387 | rna-NM_001178442.2_MUCL30387 | cds-NP_009652.2_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:417212-419473:+ | gene-YBR094W_MUCL30388 | rna-NM_001178442.2_MUCL30388 | cds-NP_009652.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:404829-407090:+ | gene-YBR094W_MUCL39482 | rna-NM_001178442.2_MUCL39482 | cds-NP_009652.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:413891-416152:+ | gene-YBR094W_MUCL42920 | rna-NM_001178442.2_MUCL42920 | cds-NP_009652.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:431833-434094:+ | gene-YBR094W_NCIM3186 | rna-NM_001178442.2_NCIM3186 | cds-NP_009652.2_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:407609-409870:+ | gene-YBR094W_NCYC1407 | rna-NM_001178442.2_NCYC1407 | cds-NP_009652.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:420225-422486:+ | gene-YBR094W_PE2H3 | rna-NM_001178442.2_PE2H3 | cds-NP_009652.2_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:417901-420162:+ | gene-YBR094W_PE2H4 | rna-NM_001178442.2_PE2H4 | cds-NP_009652.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:432036-434297:+ | gene-YBR094W_S288C | rna-NM_001178442.2_S288C | cds-NP_009652.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:43408-45669:- | gene-YBR094W_SA1 | rna-NM_001178442.2_SA1 | cds-NP_009652.2_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:429486-431747:+ | gene-YBR094W_ThermosaccDry | rna-NM_001178442.2_ThermosaccDry | cds-NP_009652.2_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:411487-413748:+ | gene-YBR094W_VR1 | rna-NM_001178442.2_VR1 | cds-NP_009652.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:405150-407411:+ | gene-YBR094W_ZTW1 | rna-NM_001178442.2_ZTW1 | cds-NP_009652.2_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:442026-444287:+ | gene-YBR094W_Sparadoxus | rna-NM_001178442.2_Sparadoxus | cds-NP_009652.2_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |