Gene name: PBP4
Reference locus (S288C): YDL053C
Gene biotype: protein_coding
Description: Pbp1p binding protein; interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): PBP1 (0.979); LSM12 (0.979); SIM1 (0.87); PAB1 (0.842); EDC3 (0.781); PUF3 (0.763); SMB1 (0.731); MKT1 (0.716); PUB1 (0.707); DHH1 (0.661); IGO1 (0.637); DCP1 (0.614); DCP2 (0.575); RPL12A (0.558); SUS1 (0.558); RPL12B (0.553); OYE2 (0.514); LSM1 (0.499); PBP2 (0.499); APE2 (0.485)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:346266-346823:- | gene-YDL053C_AKU4011 | rna-NM_001180112.1_AKU4011 | cds-NP_010230.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:202848-203405:+ | gene-YDL053C_BG1 | rna-NM_001180112.1_BG1 | cds-NP_010230.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:364088-364645:- | gene-YDL053C_Bruggeman | rna-NM_001180112.1_Bruggeman | cds-NP_010230.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:361032-361589:- | gene-YDL053C_CAT1 | rna-NM_001180112.1_CAT1 | cds-NP_010230.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:344546-345103:- | gene-YDL053C_CBS1585 | rna-NM_001180112.1_CBS1585 | cds-NP_010230.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:361252-361809:- | gene-YDL053C_CBS436 | rna-NM_001180112.1_CBS436 | cds-NP_010230.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:342614-343171:- | gene-YDL053C_CBS6412 | rna-NM_001180112.1_CBS6412 | cds-NP_010230.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:362640-363197:- | gene-YDL053C_CBS6413 | rna-NM_001180112.1_CBS6413 | cds-NP_010230.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:360516-361073:- | gene-YDL053C_CENPK1137D | rna-NM_001180112.1_CENPK1137D | cds-NP_010230.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:357100-357657:- | gene-YDL053C_EthanolRed | rna-NM_001180112.1_EthanolRed | cds-NP_010230.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:363347-363904:- | gene-YDL053C_FaliES1 | rna-NM_001180112.1_FaliES1 | cds-NP_010230.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000378.1:7055-7612:+ | gene-YDL053C_JAY291 | rna-NM_001180112.1_JAY291 | cds-NP_010230.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:361477-362034:- | gene-YDL053C_MUCL30387 | rna-NM_001180112.1_MUCL30387 | cds-NP_010230.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:352605-353162:- | gene-YDL053C_MUCL30388 | rna-NM_001180112.1_MUCL30388 | cds-NP_010230.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:345664-346221:- | gene-YDL053C_MUCL39482 | rna-NM_001180112.1_MUCL39482 | cds-NP_010230.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:267671-268228:- | gene-YDL053C_MUCL42920 | rna-NM_001180112.1_MUCL42920 | cds-NP_010230.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:361622-362179:- | gene-YDL053C_NCIM3186 | rna-NM_001180112.1_NCIM3186 | cds-NP_010230.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:345652-346209:- | gene-YDL053C_NCYC1407 | rna-NM_001180112.1_NCYC1407 | cds-NP_010230.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:352826-353383:- | gene-YDL053C_PE2H3 | rna-NM_001180112.1_PE2H3 | cds-NP_010230.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:352826-353383:- | gene-YDL053C_PE2H4 | rna-NM_001180112.1_PE2H4 | cds-NP_010230.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:361699-362256:- | gene-YDL053C_S288C | rna-NM_001180112.1_S288C | cds-NP_010230.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:72678-73235:+ | gene-YDL053C_SA1 | rna-NM_001180112.1_SA1 | cds-NP_010230.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:362799-363356:- | gene-YDL053C_ThermosaccDry | rna-NM_001180112.1_ThermosaccDry | cds-NP_010230.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:365715-366272:- | gene-YDL053C_VR1 | rna-NM_001180112.1_VR1 | cds-NP_010230.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:360729-361286:- | gene-YDL053C_ZTW1 | rna-NM_001180112.1_ZTW1 | cds-NP_010230.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:363170-363727:- | gene-YDL053C_Sparadoxus | rna-NM_001180112.1_Sparadoxus | cds-NP_010230.1_Sparadoxus | 88.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |