Gene name: PBP2
Reference locus (S288C): YBR233W
Gene biotype: protein_coding
Description: PAB1-binding protein 2; RNA binding protein; has similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): SIM1 (0.816); PAB1 (0.749); CGI121 (0.742); TIF3 (0.728); YIL152W (0.714); AIR1 (0.682); MUD2 (0.677); NAB2 (0.669); MPH1 (0.668); CTR9 (0.651); SWR1 (0.646); NAB6 (0.633); RAD9 (0.608); PAF1 (0.601); NGR1 (0.586); SNP1 (0.586); RIE1 (0.58); LCL2 (0.571); PBP1 (0.541); GBP2 (0.539)
Homologues (species, bitscore): PCBP4 (Homo sapiens, 118.2); Pcbp3 (Mus musculus, 116.3); PCBP4 (Danio rerio, 114.8); pcbp1 (Xenopus tropicalis, 113.2); mub (Drosophila melanogaster, 88.2); pes-4 (Caenorhabditis elegans, 91.3); BTR1L (Arabidopsis thaliana, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:667735-668976:+ | gene-YBR233W_AKU4011 | rna-NM_001178581.3_AKU4011 | cds-NP_009792.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:38698-39939:+ | gene-YBR233W_BG1 | rna-NM_001178581.3_BG1 | cds-NP_009792.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:668890-670131:+ | gene-YBR233W_Bruggeman | rna-NM_001178581.3_Bruggeman | cds-NP_009792.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:672096-673337:+ | gene-YBR233W_CAT1 | rna-NM_001178581.3_CAT1 | cds-NP_009792.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:659267-660508:+ | gene-YBR233W_CBS1585 | rna-NM_001178581.3_CBS1585 | cds-NP_009792.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:665693-666934:+ | gene-YBR233W_CBS436 | rna-NM_001178581.3_CBS436 | cds-NP_009792.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:754247-755488:+ | gene-YBR233W_CBS6412 | rna-NM_001178581.3_CBS6412 | cds-NP_009792.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:665310-666551:+ | gene-YBR233W_CBS6413 | rna-NM_001178581.3_CBS6413 | cds-NP_009792.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:677205-678446:+ | gene-YBR233W_CENPK1137D | rna-NM_001178581.3_CENPK1137D | cds-NP_009792.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:790976-792217:+ | gene-YBR233W_EthanolRed | rna-NM_001178581.3_EthanolRed | cds-NP_009792.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:684083-685324:+ | gene-YBR233W_FaliES1 | rna-NM_001178581.3_FaliES1 | cds-NP_009792.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:117026-118267:- | gene-YBR233W_JAY291 | rna-NM_001178581.3_JAY291 | cds-NP_009792.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:670906-672147:+ | gene-YBR233W_MUCL30387 | rna-NM_001178581.3_MUCL30387 | cds-NP_009792.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:687985-689226:+ | gene-YBR233W_MUCL30388 | rna-NM_001178581.3_MUCL30388 | cds-NP_009792.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:657619-658860:+ | gene-YBR233W_MUCL39482 | rna-NM_001178581.3_MUCL39482 | cds-NP_009792.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:667465-668706:+ | gene-YBR233W_MUCL42920 | rna-NM_001178581.3_MUCL42920 | cds-NP_009792.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:683225-684466:+ | gene-YBR233W_NCIM3186 | rna-NM_001178581.3_NCIM3186 | cds-NP_009792.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:659483-660724:+ | gene-YBR233W_NCYC1407 | rna-NM_001178581.3_NCYC1407 | cds-NP_009792.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:682598-683839:+ | gene-YBR233W_PE2H3 | rna-NM_001178581.3_PE2H3 | cds-NP_009792.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:680274-681515:+ | gene-YBR233W_PE2H4 | rna-NM_001178581.3_PE2H4 | cds-NP_009792.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:683428-684669:+ | gene-YBR233W_S288C | rna-NM_001178581.3_S288C | cds-NP_009792.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:38555-39796:+ | gene-YBR233W_SA1 | rna-NM_001178581.3_SA1 | cds-NP_009792.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:683093-684334:+ | gene-YBR233W_ThermosaccDry | rna-NM_001178581.3_ThermosaccDry | cds-NP_009792.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:663271-664512:+ | gene-YBR233W_VR1 | rna-NM_001178581.3_VR1 | cds-NP_009792.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:655956-657197:+ | gene-YBR233W_ZTW1 | rna-NM_001178581.3_ZTW1 | cds-NP_009792.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:699969-701210:+ | gene-YBR233W_Sparadoxus | rna-NM_001178581.3_Sparadoxus | cds-NP_009792.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |