Gene name: PAU4
Reference locus (S288C): YLR461W
Gene biotype: protein_coding
Description: Seripauperin-4; Member of the seripauperin multigene family; encoded mainly in subtelomeric regions; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to just the vacuole; active during alcoholic fermentation; regulated by anaerobiosis; negatively regulated by oxygen; repressed by heme
Top 10 interactors (score): PAU6 (0.988); PAU18 (0.988); PAU14 (0.988); PAU8 (0.988); PAU2 (0.988); PAU10 (0.988); PAU1 (0.988); PAU16 (0.988); PAU12 (0.988); PAU11 (0.988); PAU13 (0.988); PAU24 (0.988); PAU20 (0.975); PAU3 (0.969); PAU5 (0.969); PAU15 (0.969); PAU19 (0.969); PAU23 (0.909); PAU17 (0.895); PAU7 (0.893)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000079.1:405-767:- | gene-YLR461W_AKU4011 | rna-NM_001182349.1_AKU4011 | cds-NP_013566.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000195.1:17262-17624:+ | gene-YLR461W_BG1 | rna-NM_001182349.1_BG1 | cds-NP_013566.1_BG1 | 97.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:172-534:- | gene-YLR461W_Bruggeman | rna-NM_001182349.1_Bruggeman | cds-NP_013566.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:1036645-1037007:+ | gene-YLR461W_CAT1 | rna-NM_001182349.1_CAT1 | cds-NP_013566.1_CAT1 | 98.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:8650-9012:- | gene-YLR461W_CBS1585 | rna-NM_001182349.1_CBS1585 | cds-NP_013566.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:833702-834064:+ | gene-YLR461W_CBS436 | rna-NM_001182349.1_CBS436 | cds-NP_013566.1_CBS436 | 51.7 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000018.1:1181-1543:- | gene-YLR461W_CBS6412 | rna-NM_001182349.1_CBS6412 | cds-NP_013566.1_CBS6412 | 97.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:1532-1894:- | gene-YLR461W_CBS6413 | rna-NM_001182349.1_CBS6413 | cds-NP_013566.1_CBS6413 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1047761-1047933:+ | gene-YLR461W_CENPK1137D | rna-NM_001182349.1_CENPK1137D | cds-NP_013566.1_CENPK1137D | 47.6 | 47.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:729-1083:- | gene-YLR461W_EthanolRed | rna-NM_001182349.1_EthanolRed | cds-NP_013566.1_EthanolRed | 96.9 | 97.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:1029796-1030158:+ | gene-YLR461W_FaliES1 | rna-NM_001182349.1_FaliES1 | cds-NP_013566.1_FaliES1 | 92.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000304.1:10509-10576:- | gene-YLR461W_JAY291 | rna-NM_001182349.1_JAY291 | cds-NP_013566.1_JAY291 | 17.0 | 18.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:1040286-1040648:+ | gene-YLR461W_MUCL30387 | rna-NM_001182349.1_MUCL30387 | cds-NP_013566.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:7197-7559:- | gene-YLR461W_MUCL30388 | rna-NM_001182349.1_MUCL30388 | cds-NP_013566.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1449079-1449441:+ | gene-YLR461W_MUCL39482 | rna-NM_001182349.1_MUCL39482 | cds-NP_013566.1_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:172-534:- | gene-YLR461W_MUCL42920 | rna-NM_001182349.1_MUCL42920 | cds-NP_013566.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1062893-1063255:+ | gene-YLR461W_NCIM3186 | rna-NM_001182349.1_NCIM3186 | cds-NP_013566.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000103.1:692-1054:+ | gene-YLR461W_NCYC1407 | rna-NM_001182349.1_NCYC1407 | cds-NP_013566.1_NCYC1407 | 98.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:2236-2598:- | gene-YLR461W_PE2H3 | rna-NM_001182349.1_PE2H3 | cds-NP_013566.1_PE2H3 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:2811-3173:- | gene-YLR461W_PE2H4 | rna-NM_001182349.1_PE2H4 | cds-NP_013566.1_PE2H4 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1062919-1063281:+ | gene-YLR461W_S288C | rna-NM_001182349.1_S288C | cds-NP_013566.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000155.1:2250-2612:- | gene-YLR461W_SA1 | rna-NM_001182349.1_SA1 | cds-NP_013566.1_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:348-710:- | gene-YLR461W_ThermosaccDry | rna-NM_001182349.1_ThermosaccDry | cds-NP_013566.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000114.1:1587-1949:- | gene-YLR461W_VR1 | rna-NM_001182349.1_VR1 | cds-NP_013566.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:340642-341004:+ | gene-YLR461W_Sparadoxus | rna-NM_001182349.1_Sparadoxus | cds-NP_013566.1_Sparadoxus | 96.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |