PAU17 (YLL025W)


Gene profile

Gene name: PAU17
Reference locus (S288C): YLL025W
Gene biotype: protein_coding

Description: Seripauperin-17; Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; SWAT-GFP and mCherry fusion proteins localize to the vacuole; YLL025W is not an essential gene; Belongs to the SRP1/TIP1 family. Seripauperin subfamily

Top 10 interactors (score): PAU3 (0.928); PAU23 (0.925); PAU14 (0.923); PAU19 (0.923); PAU12 (0.923); PAU1 (0.923); PAU5 (0.92); PAU2 (0.915); PAU15 (0.914); PAU16 (0.91); PAU24 (0.899); PAU6 (0.895); PAU4 (0.895); PAU7 (0.878); PAU20 (0.848); PAU18 (0.838); PAU13 (0.813); PAU11 (0.787); PAU10 (0.781); SPO19 (0.745)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:81910-82284:+ gene-YLL025W_AKU4011 rna-NM_001181845.1_AKU4011 cds-NP_013075.1_AKU4011 99.4 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000212.1:45856-46230:+ gene-YLL025W_BG1 rna-NM_001181845.1_BG1 cds-NP_013075.1_BG1 100.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:92162-92536:+ gene-YLL025W_Bruggeman rna-NM_001181845.1_Bruggeman cds-NP_013075.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:92779-93153:+ gene-YLL025W_CAT1 rna-NM_001181845.1_CAT1 cds-NP_013075.1_CAT1 99.7 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:89608-89982:+ gene-YLL025W_CBS1585 rna-NM_001181845.1_CBS1585 cds-NP_013075.1_CBS1585 99.4 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:79806-80180:+ gene-YLL025W_CBS436 rna-NM_001181845.1_CBS436 cds-NP_013075.1_CBS436 99.7 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:89525-89899:+ gene-YLL025W_CBS6412 rna-NM_001181845.1_CBS6412 cds-NP_013075.1_CBS6412 99.4 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:89617-89991:+ gene-YLL025W_CBS6413 rna-NM_001181845.1_CBS6413 cds-NP_013075.1_CBS6413 99.7 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:79752-80126:+ gene-YLL025W_CENPK1137D rna-NM_001181845.1_CENPK1137D cds-NP_013075.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:82304-82678:+ gene-YLL025W_EthanolRed rna-NM_001181845.1_EthanolRed cds-NP_013075.1_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:81618-81992:+ gene-YLL025W_FaliES1 rna-NM_001181845.1_FaliES1 cds-NP_013075.1_FaliES1 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000062.1:1-132:- gene-YLL025W_JAY291 rna-NM_001181845.1_JAY291 cds-NP_013075.1_JAY291 35.2 35.2 Mismatch 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:89575-89949:+ gene-YLL025W_MUCL30387 rna-NM_001181845.1_MUCL30387 cds-NP_013075.1_MUCL30387 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:94303-94677:+ gene-YLL025W_MUCL30388 rna-NM_001181845.1_MUCL30388 cds-NP_013075.1_MUCL30388 99.7 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:89817-90191:+ gene-YLL025W_MUCL39482 rna-NM_001181845.1_MUCL39482 cds-NP_013075.1_MUCL39482 99.4 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:89912-90286:+ gene-YLL025W_MUCL42920 rna-NM_001181845.1_MUCL42920 cds-NP_013075.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:94721-95095:+ gene-YLL025W_NCIM3186 rna-NM_001181845.1_NCIM3186 cds-NP_013075.1_NCIM3186 99.4 100.0 Mismatch 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:81683-82057:+ gene-YLL025W_NCYC1407 rna-NM_001181845.1_NCYC1407 cds-NP_013075.1_NCYC1407 99.4 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:88367-88741:+ gene-YLL025W_PE2H3 rna-NM_001181845.1_PE2H3 cds-NP_013075.1_PE2H3 100.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:88177-88551:+ gene-YLL025W_PE2H4 rna-NM_001181845.1_PE2H4 cds-NP_013075.1_PE2H4 99.7 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:94747-95121:+ gene-YLL025W_S288C rna-NM_001181845.1_S288C cds-NP_013075.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000047.1:88331-88705:+ gene-YLL025W_SA1 rna-NM_001181845.1_SA1 cds-NP_013075.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:82124-82498:+ gene-YLL025W_ThermosaccDry rna-NM_001181845.1_ThermosaccDry cds-NP_013075.1_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:143900-144274:+ gene-YLL025W_VR1 rna-NM_001181845.1_VR1 cds-NP_013075.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:81693-82067:+ gene-YLL025W_ZTW1 rna-NM_001181845.1_ZTW1 cds-NP_013075.1_ZTW1 99.7 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:90199-90573:+ gene-YLL025W_Sparadoxus rna-NM_001181845.1_Sparadoxus cds-NP_013075.1_Sparadoxus 93.6 100.0 Verified 1 1 1 False True False False False

Additional files