Gene name: PAP1
Reference locus (S288C): YKR002W
Gene biotype: protein_coding
Description: Polynucleotide adenylyltransferase pap1; Poly(A) polymerase; one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping
Top 10 interactors (score): CFT2 (0.999); RNA15 (0.999); MPE1 (0.999); REF2 (0.999); PTI1 (0.999); PTA1 (0.999); GLC7 (0.999); SWD2 (0.999); RNA14 (0.999); YSH1 (0.999); FIP1 (0.999); CFT1 (0.999); YTH1 (0.999); SSU72 (0.999); PFS2 (0.999); PCF11 (0.997); MTR4 (0.997); SYC1 (0.994); RRP6 (0.991); AIR1 (0.973)
Homologues (species, bitscore): PAPOLA (Homo sapiens, 404.8); Papolb (Mus musculus, 404.1); papola (Danio rerio, 408.3); papola (Xenopus tropicalis, 397.9); hrg (Drosophila melanogaster, 401.4); pap-1 (Caenorhabditis elegans, 364.4); PAPS1 (Arabidopsis thaliana, 371.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:429254-430960:+ | gene-YKR002W_AKU4011 | rna-NM_001179792.3_AKU4011 | cds-NP_012927.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:212965-214671:- | gene-YKR002W_BG1 | rna-NM_001179792.3_BG1 | cds-NP_012927.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:450939-452645:+ | gene-YKR002W_Bruggeman | rna-NM_001179792.3_Bruggeman | cds-NP_012927.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:446045-447751:+ | gene-YKR002W_CAT1 | rna-NM_001179792.3_CAT1 | cds-NP_012927.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:441973-443679:+ | gene-YKR002W_CBS1585 | rna-NM_001179792.3_CBS1585 | cds-NP_012927.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:440814-442520:+ | gene-YKR002W_CBS436 | rna-NM_001179792.3_CBS436 | cds-NP_012927.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:426131-427837:+ | gene-YKR002W_CBS6412 | rna-NM_001179792.3_CBS6412 | cds-NP_012927.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:441826-443532:+ | gene-YKR002W_CBS6413 | rna-NM_001179792.3_CBS6413 | cds-NP_012927.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:442909-444615:+ | gene-YKR002W_CENPK1137D | rna-NM_001179792.3_CENPK1137D | cds-NP_012927.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:439735-441441:+ | gene-YKR002W_EthanolRed | rna-NM_001179792.3_EthanolRed | cds-NP_012927.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:441825-443531:+ | gene-YKR002W_FaliES1 | rna-NM_001179792.3_FaliES1 | cds-NP_012927.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000120.1:13294-15000:- | gene-YKR002W_JAY291 | rna-NM_001179792.3_JAY291 | cds-NP_012927.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:450253-451959:+ | gene-YKR002W_MUCL30387 | rna-NM_001179792.3_MUCL30387 | cds-NP_012927.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:445864-447570:+ | gene-YKR002W_MUCL30388 | rna-NM_001179792.3_MUCL30388 | cds-NP_012927.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:441290-442996:+ | gene-YKR002W_MUCL39482 | rna-NM_001179792.3_MUCL39482 | cds-NP_012927.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:447098-448804:+ | gene-YKR002W_MUCL42920 | rna-NM_001179792.3_MUCL42920 | cds-NP_012927.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:443221-444927:+ | gene-YKR002W_NCIM3186 | rna-NM_001179792.3_NCIM3186 | cds-NP_012927.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:441498-443204:+ | gene-YKR002W_NCYC1407 | rna-NM_001179792.3_NCYC1407 | cds-NP_012927.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:466152-467858:+ | gene-YKR002W_PE2H3 | rna-NM_001179792.3_PE2H3 | cds-NP_012927.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:450894-452600:+ | gene-YKR002W_PE2H4 | rna-NM_001179792.3_PE2H4 | cds-NP_012927.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:443232-444938:+ | gene-YKR002W_S288C | rna-NM_001179792.3_S288C | cds-NP_012927.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:121497-123203:+ | gene-YKR002W_SA1 | rna-NM_001179792.3_SA1 | cds-NP_012927.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:441923-443629:+ | gene-YKR002W_ThermosaccDry | rna-NM_001179792.3_ThermosaccDry | cds-NP_012927.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:441175-442881:+ | gene-YKR002W_VR1 | rna-NM_001179792.3_VR1 | cds-NP_012927.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:439962-441668:+ | gene-YKR002W_ZTW1 | rna-NM_001179792.3_ZTW1 | cds-NP_012927.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:464897-466603:+ | gene-YKR002W_Sparadoxus | rna-NM_001179792.3_Sparadoxus | cds-NP_012927.3_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |