Gene name: PAN3
Reference locus (S288C): YKL025C
Gene biotype: protein_coding
Description: Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; poly (A) mRNA binding subunit which recruits mRNA to the complex; the Pan2p-Pan3p complex controls poly(A) tail length and regulates the stoichiometry and activity of postreplication repair complexes
Top 10 interactors (score): PAN2 (0.999); PAB1 (0.992); CCR4 (0.971); SCC2 (0.923); POP2 (0.848); CIN1 (0.83); DUN1 (0.781); NGL1 (0.771); EDC3 (0.743); CIN4 (0.733); ALK1 (0.726); XRN1 (0.716); DHH1 (0.706); KKQ8 (0.671); CDC39 (0.667); TUB3 (0.66); FMP48 (0.654); YPL150W (0.653); RNH70 (0.653); REX4 (0.631)
Homologues (species, bitscore): PAN3 (Homo sapiens, 198.7); Pan3 (Mus musculus, 196.1); pan3 (Danio rerio, 207.2); pan3 (Xenopus tropicalis, 199.9); CG11486 (Drosophila melanogaster, 204.9); panl-3 (Caenorhabditis elegans, 211.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:376258-378297:- | gene-YKL025C_AKU4011 | rna-NM_001179591.1_AKU4011 | cds-NP_012900.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:265609-267648:+ | gene-YKL025C_BG1 | rna-NM_001179591.1_BG1 | cds-NP_012900.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:397953-399992:- | gene-YKL025C_Bruggeman | rna-NM_001179591.1_Bruggeman | cds-NP_012900.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:393068-395107:- | gene-YKL025C_CAT1 | rna-NM_001179591.1_CAT1 | cds-NP_012900.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:388977-391016:- | gene-YKL025C_CBS1585 | rna-NM_001179591.1_CBS1585 | cds-NP_012900.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:387827-389866:- | gene-YKL025C_CBS436 | rna-NM_001179591.1_CBS436 | cds-NP_012900.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:373133-375172:- | gene-YKL025C_CBS6412 | rna-NM_001179591.1_CBS6412 | cds-NP_012900.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:388832-390871:- | gene-YKL025C_CBS6413 | rna-NM_001179591.1_CBS6413 | cds-NP_012900.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:389917-391956:- | gene-YKL025C_CENPK1137D | rna-NM_001179591.1_CENPK1137D | cds-NP_012900.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:386754-388793:- | gene-YKL025C_EthanolRed | rna-NM_001179591.1_EthanolRed | cds-NP_012900.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:388844-390883:- | gene-YKL025C_FaliES1 | rna-NM_001179591.1_FaliES1 | cds-NP_012900.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:40168-42207:+ | gene-YKL025C_JAY291 | rna-NM_001179591.1_JAY291 | cds-NP_012900.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:397268-399307:- | gene-YKL025C_MUCL30387 | rna-NM_001179591.1_MUCL30387 | cds-NP_012900.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:392877-394916:- | gene-YKL025C_MUCL30388 | rna-NM_001179591.1_MUCL30388 | cds-NP_012900.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:388294-390333:- | gene-YKL025C_MUCL39482 | rna-NM_001179591.1_MUCL39482 | cds-NP_012900.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:394121-396160:- | gene-YKL025C_MUCL42920 | rna-NM_001179591.1_MUCL42920 | cds-NP_012900.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:390229-392268:- | gene-YKL025C_NCIM3186 | rna-NM_001179591.1_NCIM3186 | cds-NP_012900.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:388486-390525:- | gene-YKL025C_NCYC1407 | rna-NM_001179591.1_NCYC1407 | cds-NP_012900.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:413175-415214:- | gene-YKL025C_PE2H3 | rna-NM_001179591.1_PE2H3 | cds-NP_012900.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:397919-399958:- | gene-YKL025C_PE2H4 | rna-NM_001179591.1_PE2H4 | cds-NP_012900.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:390240-392279:- | gene-YKL025C_S288C | rna-NM_001179591.1_S288C | cds-NP_012900.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:68519-70558:- | gene-YKL025C_SA1 | rna-NM_001179591.1_SA1 | cds-NP_012900.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:388943-390982:- | gene-YKL025C_ThermosaccDry | rna-NM_001179591.1_ThermosaccDry | cds-NP_012900.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:388200-390239:- | gene-YKL025C_VR1 | rna-NM_001179591.1_VR1 | cds-NP_012900.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:386971-389010:- | gene-YKL025C_ZTW1 | rna-NM_001179591.1_ZTW1 | cds-NP_012900.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:411936-413978:- | gene-YKL025C_Sparadoxus | rna-NM_001179591.1_Sparadoxus | cds-NP_012900.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |