Gene name: PAN2
Reference locus (S288C): YGL094C
Gene biotype: protein_coding
Description: Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; Belongs to the peptidase C19 family. PAN2 subfamily
Top 10 interactors (score): PAN3 (0.999); CCR4 (0.994); PAB1 (0.973); POP2 (0.953); CDC39 (0.895); XRN1 (0.879); CRM1 (0.875); LRG1 (0.872); EDC3 (0.837); NGL1 (0.799); YGL101W (0.752); LSM1 (0.747); DCP1 (0.722); PAN5 (0.717); PAP1 (0.71); SPO19 (0.69); CDC50 (0.684); DCP2 (0.674); DHH1 (0.664); SWC4 (0.648)
Homologues (species, bitscore): PAN2 (Homo sapiens, 337.4); Pan2 (Mus musculus, 334.3); LOC792831 (Danio rerio, 334.0); pan2 (Xenopus tropicalis, 337.4); PAN2 (Drosophila melanogaster, 312.8); panl-2 (Caenorhabditis elegans, 148.3); AT3G15080 (Arabidopsis thaliana, 94.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:334091-337438:- | gene-YGL094C_AKU4011 | rna-NM_001180959.1_AKU4011 | cds-NP_011421.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:67946-71293:+ | gene-YGL094C_BG1 | rna-NM_001180959.1_BG1 | cds-NP_011421.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:336583-339930:- | gene-YGL094C_Bruggeman | rna-NM_001180959.1_Bruggeman | cds-NP_011421.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:333476-336823:- | gene-YGL094C_CAT1 | rna-NM_001180959.1_CAT1 | cds-NP_011421.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:337416-340763:- | gene-YGL094C_CBS1585 | rna-NM_001180959.1_CBS1585 | cds-NP_011421.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:331700-335047:- | gene-YGL094C_CBS436 | rna-NM_001180959.1_CBS436 | cds-NP_011421.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:321797-325144:- | gene-YGL094C_CBS6412 | rna-NM_001180959.1_CBS6412 | cds-NP_011421.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:331722-335069:- | gene-YGL094C_CBS6413 | rna-NM_001180959.1_CBS6413 | cds-NP_011421.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:331305-334652:- | gene-YGL094C_CENPK1137D | rna-NM_001180959.1_CENPK1137D | cds-NP_011421.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:323176-326523:- | gene-YGL094C_EthanolRed | rna-NM_001180959.1_EthanolRed | cds-NP_011421.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:325737-329084:- | gene-YGL094C_FaliES1 | rna-NM_001180959.1_FaliES1 | cds-NP_011421.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:11380-14727:- | gene-YGL094C_JAY291 | rna-NM_001180959.1_JAY291 | cds-NP_011421.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:333560-336907:- | gene-YGL094C_MUCL30387 | rna-NM_001180959.1_MUCL30387 | cds-NP_011421.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:336546-339893:- | gene-YGL094C_MUCL30388 | rna-NM_001180959.1_MUCL30388 | cds-NP_011421.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:333944-337291:- | gene-YGL094C_MUCL39482 | rna-NM_001180959.1_MUCL39482 | cds-NP_011421.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:338471-341818:- | gene-YGL094C_MUCL42920 | rna-NM_001180959.1_MUCL42920 | cds-NP_011421.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:331118-334465:- | gene-YGL094C_NCIM3186 | rna-NM_001180959.1_NCIM3186 | cds-NP_011421.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:325479-328826:- | gene-YGL094C_NCYC1407 | rna-NM_001180959.1_NCYC1407 | cds-NP_011421.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:327146-330493:- | gene-YGL094C_PE2H3 | rna-NM_001180959.1_PE2H3 | cds-NP_011421.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:332143-335490:- | gene-YGL094C_PE2H4 | rna-NM_001180959.1_PE2H4 | cds-NP_011421.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:331118-334465:- | gene-YGL094C_S288C | rna-NM_001180959.1_S288C | cds-NP_011421.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000089.1:8500-11847:- | gene-YGL094C_SA1 | rna-NM_001180959.1_SA1 | cds-NP_011421.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:325990-329337:- | gene-YGL094C_ThermosaccDry | rna-NM_001180959.1_ThermosaccDry | cds-NP_011421.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:435851-439198:- | gene-YGL094C_VR1 | rna-NM_001180959.1_VR1 | cds-NP_011421.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:323344-326691:- | gene-YGL094C_ZTW1 | rna-NM_001180959.1_ZTW1 | cds-NP_011421.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:329039-332386:- | gene-YGL094C_Sparadoxus | rna-NM_001180959.1_Sparadoxus | cds-NP_011421.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |