Gene name: PAM18
Reference locus (S288C): YLR008C
Gene biotype: protein_coding
Description: Subunit of the import motor (PAM complex); the PAM complex is a component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); essential J-protein cochaperone that stimulates Ssc1p ATPase activity to drive import; inhibited by Pam16p
Top 10 interactors (score): PAM16 (0.999); SSC1 (0.999); TIM50 (0.999); TIM17 (0.999); TIM44 (0.999); MGE1 (0.999); TIM21 (0.998); TIM23 (0.998); PAM17 (0.992); JAC1 (0.977); MGR2 (0.975); MAS2 (0.97); TOM22 (0.963); MAS1 (0.96); MDJ1 (0.957); TOM40 (0.941); TIM54 (0.925); TIM9 (0.916); TIM10 (0.911); HSP60 (0.909)
Homologues (species, bitscore): DNAJC19 (Homo sapiens, 84.0); Dnajc15 (Mus musculus, 79.7); dnajc19 (Danio rerio, 88.6); dnajc19 (Xenopus tropicalis, 88.6); CG7394 (Drosophila melanogaster, 90.1); dnj-21 (Caenorhabditis elegans, 82.4); AT2G35795 (Arabidopsis thaliana, 79.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:153558-154064:- | gene-YLR008C_AKU4011 | rna-NM_001181895.1_AKU4011 | cds-NP_013108.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:116765-117271:- | gene-YLR008C_BG1 | rna-NM_001181895.1_BG1 | cds-NP_013108.1_BG1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:163928-164434:- | gene-YLR008C_Bruggeman | rna-NM_001181895.1_Bruggeman | cds-NP_013108.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:164247-164753:- | gene-YLR008C_CAT1 | rna-NM_001181895.1_CAT1 | cds-NP_013108.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:161156-161662:- | gene-YLR008C_CBS1585 | rna-NM_001181895.1_CBS1585 | cds-NP_013108.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:151780-152286:- | gene-YLR008C_CBS436 | rna-NM_001181895.1_CBS436 | cds-NP_013108.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:159927-160433:- | gene-YLR008C_CBS6412 | rna-NM_001181895.1_CBS6412 | cds-NP_013108.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:161423-161929:- | gene-YLR008C_CBS6413 | rna-NM_001181895.1_CBS6413 | cds-NP_013108.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:150839-151345:- | gene-YLR008C_CENPK1137D | rna-NM_001181895.1_CENPK1137D | cds-NP_013108.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:153578-154084:- | gene-YLR008C_EthanolRed | rna-NM_001181895.1_EthanolRed | cds-NP_013108.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:153149-153655:- | gene-YLR008C_FaliES1 | rna-NM_001181895.1_FaliES1 | cds-NP_013108.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:1941-2447:+ | gene-YLR008C_JAY291 | rna-NM_001181895.1_JAY291 | cds-NP_013108.1_JAY291 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:161284-161790:- | gene-YLR008C_MUCL30387 | rna-NM_001181895.1_MUCL30387 | cds-NP_013108.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:166981-167487:- | gene-YLR008C_MUCL30388 | rna-NM_001181895.1_MUCL30388 | cds-NP_013108.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:161628-162134:- | gene-YLR008C_MUCL39482 | rna-NM_001181895.1_MUCL39482 | cds-NP_013108.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:161553-162059:- | gene-YLR008C_MUCL42920 | rna-NM_001181895.1_MUCL42920 | cds-NP_013108.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:165551-166057:- | gene-YLR008C_NCIM3186 | rna-NM_001181895.1_NCIM3186 | cds-NP_013108.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:153231-153737:- | gene-YLR008C_NCYC1407 | rna-NM_001181895.1_NCYC1407 | cds-NP_013108.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:159575-160081:- | gene-YLR008C_PE2H3 | rna-NM_001181895.1_PE2H3 | cds-NP_013108.1_PE2H3 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:159316-159822:- | gene-YLR008C_PE2H4 | rna-NM_001181895.1_PE2H4 | cds-NP_013108.1_PE2H4 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:165577-166083:- | gene-YLR008C_S288C | rna-NM_001181895.1_S288C | cds-NP_013108.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:68774-69280:- | gene-YLR008C_SA1 | rna-NM_001181895.1_SA1 | cds-NP_013108.1_SA1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:153652-154158:- | gene-YLR008C_ThermosaccDry | rna-NM_001181895.1_ThermosaccDry | cds-NP_013108.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:167028-167534:- | gene-YLR008C_VR1 | rna-NM_001181895.1_VR1 | cds-NP_013108.1_VR1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:152983-153489:- | gene-YLR008C_ZTW1 | rna-NM_001181895.1_ZTW1 | cds-NP_013108.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:161586-162092:- | gene-YLR008C_Sparadoxus | rna-NM_001181895.1_Sparadoxus | cds-NP_013108.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |