Gene name: PAM16
Reference locus (S288C): YJL104W
Gene biotype: protein_coding
Description: Subunit of the import motor (PAM complex); the PAM complex is a component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains a J-like domain; Belongs to the TIM16/PAM16 family
Top 10 interactors (score): TIM50 (0.999); SSC1 (0.999); TIM17 (0.999); TIM21 (0.999); MGE1 (0.999); PAM18 (0.999); TIM44 (0.999); TIM23 (0.999); PAM17 (0.997); MDJ2 (0.984); TOM22 (0.983); TIM8 (0.979); MAS1 (0.977); MGR2 (0.972); TIM54 (0.964); TIM13 (0.961); MAS2 (0.955); TIM9 (0.949); TOM40 (0.941); TIM12 (0.924)
Homologues (species, bitscore): CORO7-PAM16 (Homo sapiens, 88.2); Pam16 (Mus musculus, 86.3); pam16 (Danio rerio, 91.7); pam16 (Xenopus tropicalis, 75.5); blp (Drosophila melanogaster, 92.0); F45G2.8 (Caenorhabditis elegans, 75.5); AT5G61880 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:210064-210513:+ | gene-YJL104W_AKU4011 | rna-NM_001181537.1_AKU4011 | cds-NP_012431.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:403938-404387:- | gene-YJL104W_BG1 | rna-NM_001181537.1_BG1 | cds-NP_012431.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:221492-221941:+ | gene-YJL104W_Bruggeman | rna-NM_001181537.1_Bruggeman | cds-NP_012431.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:226406-226855:+ | gene-YJL104W_CAT1 | rna-NM_001181537.1_CAT1 | cds-NP_012431.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:221725-222174:+ | gene-YJL104W_CBS1585 | rna-NM_001181537.1_CBS1585 | cds-NP_012431.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:239816-240265:+ | gene-YJL104W_CBS436 | rna-NM_001181537.1_CBS436 | cds-NP_012431.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:210821-211270:+ | gene-YJL104W_CBS6412 | rna-NM_001181537.1_CBS6412 | cds-NP_012431.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:212177-212626:+ | gene-YJL104W_CBS6413 | rna-NM_001181537.1_CBS6413 | cds-NP_012431.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:209779-210228:+ | gene-YJL104W_CENPK1137D | rna-NM_001181537.1_CENPK1137D | cds-NP_012431.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:213913-214362:+ | gene-YJL104W_EthanolRed | rna-NM_001181537.1_EthanolRed | cds-NP_012431.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:225490-225939:+ | gene-YJL104W_FaliES1 | rna-NM_001181537.1_FaliES1 | cds-NP_012431.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:23108-23557:+ | gene-YJL104W_JAY291 | rna-NM_001181537.1_JAY291 | cds-NP_012431.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:223759-224208:+ | gene-YJL104W_MUCL30387 | rna-NM_001181537.1_MUCL30387 | cds-NP_012431.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:219838-220287:+ | gene-YJL104W_MUCL30388 | rna-NM_001181537.1_MUCL30388 | cds-NP_012431.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:214482-214931:+ | gene-YJL104W_MUCL39482 | rna-NM_001181537.1_MUCL39482 | cds-NP_012431.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:220667-221116:+ | gene-YJL104W_MUCL42920 | rna-NM_001181537.1_MUCL42920 | cds-NP_012431.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:227306-227755:+ | gene-YJL104W_NCIM3186 | rna-NM_001181537.1_NCIM3186 | cds-NP_012431.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:213172-213621:+ | gene-YJL104W_NCYC1407 | rna-NM_001181537.1_NCYC1407 | cds-NP_012431.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:225533-225982:+ | gene-YJL104W_PE2H3 | rna-NM_001181537.1_PE2H3 | cds-NP_012431.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:225177-225626:+ | gene-YJL104W_PE2H4 | rna-NM_001181537.1_PE2H4 | cds-NP_012431.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:227327-227776:+ | gene-YJL104W_S288C | rna-NM_001181537.1_S288C | cds-NP_012431.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:23050-23499:+ | gene-YJL104W_SA1 | rna-NM_001181537.1_SA1 | cds-NP_012431.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:218899-219348:+ | gene-YJL104W_ThermosaccDry | rna-NM_001181537.1_ThermosaccDry | cds-NP_012431.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:219312-219761:+ | gene-YJL104W_VR1 | rna-NM_001181537.1_VR1 | cds-NP_012431.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:200259-200708:+ | gene-YJL104W_ZTW1 | rna-NM_001181537.1_ZTW1 | cds-NP_012431.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:224352-224801:+ | gene-YJL104W_Sparadoxus | rna-NM_001181537.1_Sparadoxus | cds-NP_012431.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |