Gene name: PAM1
Reference locus (S288C): YDR251W
Gene biotype: protein_coding
Description: Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype; PAM1 has a paralog, SVL3, that arose from the whole genome duplication
Top 10 interactors (score): PAN5 (0.897); PPG1 (0.747); KHA1 (0.69); IMD4 (0.623); LOA1 (0.611); TOK1 (0.597); SSK2 (0.575); DLD3 (0.569); CMP2 (0.568); NHA1 (0.503); NHX1 (0.499); SVL3 (0.495); NPP1 (0.47); NPP2 (0.47); PUF3 (0.469); DPM1 (0.464); MSN2 (0.45); TDH1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:916943-919435:+ | gene-YDR251W_AKU4011 | rna-NM_001180559.3_AKU4011 | cds-NP_010537.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:205870-208362:- | gene-YDR251W_BG1 | rna-NM_001180559.3_BG1 | cds-NP_010537.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:949272-951764:+ | gene-YDR251W_Bruggeman | rna-NM_001180559.3_Bruggeman | cds-NP_010537.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:936557-939049:+ | gene-YDR251W_CAT1 | rna-NM_001180559.3_CAT1 | cds-NP_010537.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:907292-909784:+ | gene-YDR251W_CBS1585 | rna-NM_001180559.3_CBS1585 | cds-NP_010537.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:936851-939343:+ | gene-YDR251W_CBS436 | rna-NM_001180559.3_CBS436 | cds-NP_010537.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:904052-906544:+ | gene-YDR251W_CBS6412 | rna-NM_001180559.3_CBS6412 | cds-NP_010537.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:935146-937638:+ | gene-YDR251W_CBS6413 | rna-NM_001180559.3_CBS6413 | cds-NP_010537.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:959539-962031:+ | gene-YDR251W_CENPK1137D | rna-NM_001180559.3_CENPK1137D | cds-NP_010537.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:917611-920103:+ | gene-YDR251W_EthanolRed | rna-NM_001180559.3_EthanolRed | cds-NP_010537.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:925813-928305:+ | gene-YDR251W_FaliES1 | rna-NM_001180559.3_FaliES1 | cds-NP_010537.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000261.1:14347-16839:+ | gene-YDR251W_JAY291 | rna-NM_001180559.3_JAY291 | cds-NP_010537.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:935170-937662:+ | gene-YDR251W_MUCL30387 | rna-NM_001180559.3_MUCL30387 | cds-NP_010537.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:923200-925692:+ | gene-YDR251W_MUCL30388 | rna-NM_001180559.3_MUCL30388 | cds-NP_010537.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:908697-911189:+ | gene-YDR251W_MUCL39482 | rna-NM_001180559.3_MUCL39482 | cds-NP_010537.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:848461-850953:+ | gene-YDR251W_MUCL42920 | rna-NM_001180559.3_MUCL42920 | cds-NP_010537.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:960537-963029:+ | gene-YDR251W_NCIM3186 | rna-NM_001180559.3_NCIM3186 | cds-NP_010537.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:912366-914858:+ | gene-YDR251W_NCYC1407 | rna-NM_001180559.3_NCYC1407 | cds-NP_010537.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:928624-931116:+ | gene-YDR251W_PE2H3 | rna-NM_001180559.3_PE2H3 | cds-NP_010537.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:933901-936393:+ | gene-YDR251W_PE2H4 | rna-NM_001180559.3_PE2H4 | cds-NP_010537.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:960614-963106:+ | gene-YDR251W_S288C | rna-NM_001180559.3_S288C | cds-NP_010537.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:166461-168953:+ | gene-YDR251W_SA1 | rna-NM_001180559.3_SA1 | cds-NP_010537.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:923967-926459:+ | gene-YDR251W_ThermosaccDry | rna-NM_001180559.3_ThermosaccDry | cds-NP_010537.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:939224-941716:+ | gene-YDR251W_VR1 | rna-NM_001180559.3_VR1 | cds-NP_010537.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:186711-189203:+ | gene-YDR251W_ZTW1 | rna-NM_001180559.3_ZTW1 | cds-NP_010537.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:929372-931879:+ | gene-YDR251W_Sparadoxus | rna-NM_001180559.3_Sparadoxus | cds-NP_010537.3_Sparadoxus | 87.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |