Gene name: PAL1
Reference locus (S288C): YDR348C
Gene biotype: protein_coding
Description: Protein of unknown function thought to be involved in endocytosis; physically interacts with Ede1p and is found at endocytic sites at cell periphery during early stages of endocytosis; green fluorescent protein (GFP)-fusion protein localizes to bud neck; potential Cdc28p substrate; similar to S. pombe Pal1 protein; relocalizes from bud neck to cytoplasm upon DNA replication stress; PAL1 has a paralog, YHR097C, that arose from the whole genome duplication
Top 10 interactors (score): EDE1 (0.933); YMR295C (0.784); YCR043C (0.75); BIL1 (0.748); TDA2 (0.747); YAP1802 (0.718); ENT1 (0.658); SLA2 (0.657); CLC1 (0.62); CHC1 (0.604); DUO1 (0.57); RIM21 (0.523); GCR1 (0.477); ATG26 (0.463); MID1 (0.445); ASK10 (0.44); END3 (0.419); BMH2 (0.402)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1116168-1117667:- | gene-YDR348C_AKU4011 | rna-NM_001180656.1_AKU4011 | cds-NP_010635.1_AKU4011 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000189.1:13686-15185:- | gene-YDR348C_BG1 | rna-NM_001180656.1_BG1 | cds-NP_010635.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1146440-1147939:- | gene-YDR348C_Bruggeman | rna-NM_001180656.1_Bruggeman | cds-NP_010635.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1125300-1126799:- | gene-YDR348C_CAT1 | rna-NM_001180656.1_CAT1 | cds-NP_010635.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1110884-1112383:- | gene-YDR348C_CBS1585 | rna-NM_001180656.1_CBS1585 | cds-NP_010635.1_CBS1585 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1129690-1131189:- | gene-YDR348C_CBS436 | rna-NM_001180656.1_CBS436 | cds-NP_010635.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1107298-1108797:- | gene-YDR348C_CBS6412 | rna-NM_001180656.1_CBS6412 | cds-NP_010635.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1129037-1130536:- | gene-YDR348C_CBS6413 | rna-NM_001180656.1_CBS6413 | cds-NP_010635.1_CBS6413 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1168974-1170473:- | gene-YDR348C_CENPK1137D | rna-NM_001180656.1_CENPK1137D | cds-NP_010635.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1120924-1122423:- | gene-YDR348C_EthanolRed | rna-NM_001180656.1_EthanolRed | cds-NP_010635.1_EthanolRed | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1123860-1125359:- | gene-YDR348C_FaliES1 | rna-NM_001180656.1_FaliES1 | cds-NP_010635.1_FaliES1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000423.1:5931-7430:- | gene-YDR348C_JAY291 | rna-NM_001180656.1_JAY291 | cds-NP_010635.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1130343-1131842:- | gene-YDR348C_MUCL30387 | rna-NM_001180656.1_MUCL30387 | cds-NP_010635.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1112726-1114225:- | gene-YDR348C_MUCL30388 | rna-NM_001180656.1_MUCL30388 | cds-NP_010635.1_MUCL30388 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1102418-1103917:- | gene-YDR348C_MUCL39482 | rna-NM_001180656.1_MUCL39482 | cds-NP_010635.1_MUCL39482 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1044577-1046076:- | gene-YDR348C_MUCL42920 | rna-NM_001180656.1_MUCL42920 | cds-NP_010635.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1170249-1171748:- | gene-YDR348C_NCIM3186 | rna-NM_001180656.1_NCIM3186 | cds-NP_010635.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1115954-1117453:- | gene-YDR348C_NCYC1407 | rna-NM_001180656.1_NCYC1407 | cds-NP_010635.1_NCYC1407 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1121558-1123057:- | gene-YDR348C_PE2H3 | rna-NM_001180656.1_PE2H3 | cds-NP_010635.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1127143-1128642:- | gene-YDR348C_PE2H4 | rna-NM_001180656.1_PE2H4 | cds-NP_010635.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1170326-1171825:- | gene-YDR348C_S288C | rna-NM_001180656.1_S288C | cds-NP_010635.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:135780-137279:- | gene-YDR348C_SA1 | rna-NM_001180656.1_SA1 | cds-NP_010635.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1128133-1129632:- | gene-YDR348C_ThermosaccDry | rna-NM_001180656.1_ThermosaccDry | cds-NP_010635.1_ThermosaccDry | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1137953-1139452:- | gene-YDR348C_VR1 | rna-NM_001180656.1_VR1 | cds-NP_010635.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:171538-173037:- | gene-YDR348C_ZTW1 | rna-NM_001180656.1_ZTW1 | cds-NP_010635.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1122937-1124436:- | gene-YDR348C_Sparadoxus | rna-NM_001180656.1_Sparadoxus | cds-NP_010635.1_Sparadoxus | 90.0 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |