Gene name: PAC2
Reference locus (S288C): YER007W
Gene biotype: protein_coding
Description: Protein PAC2; Microtubule effector required for tubulin heterodimer formation; binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl
Top 10 interactors (score): TUB1 (0.999); CIN1 (0.999); TUB3 (0.999); ALF1 (0.999); RBL2 (0.994); CIN4 (0.979); TUB2 (0.972); CIN2 (0.852); PAC1 (0.839); JNM1 (0.82); YHL008C (0.8); CIN8 (0.794); BIK1 (0.786); ADD66 (0.749); YIL108W (0.748); PBA1 (0.747); YER034W (0.746); IRC25 (0.746); MAD2 (0.72); POC4 (0.712)
Homologues (species, bitscore): TBCE (Homo sapiens, 117.9); Tbce (Mus musculus, 137.9); tbce (Danio rerio, 108.2); tbce (Xenopus tropicalis, 127.5); Tbce (Drosophila melanogaster, 88.6); K07H8.1 (Caenorhabditis elegans, 89.7); PFI (Arabidopsis thaliana, 100.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:158216-159772:+ | gene-YER007W_AKU4011 | rna-NM_001178898.1_AKU4011 | cds-NP_010922.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:265912-267468:- | gene-YER007W_BG1 | rna-NM_001178898.1_BG1 | cds-NP_010922.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:165903-167459:+ | gene-YER007W_Bruggeman | rna-NM_001178898.1_Bruggeman | cds-NP_010922.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:161132-162688:+ | gene-YER007W_CAT1 | rna-NM_001178898.1_CAT1 | cds-NP_010922.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:158525-160081:+ | gene-YER007W_CBS1585 | rna-NM_001178898.1_CBS1585 | cds-NP_010922.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:159794-161350:+ | gene-YER007W_CBS436 | rna-NM_001178898.1_CBS436 | cds-NP_010922.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:158419-159975:+ | gene-YER007W_CBS6412 | rna-NM_001178898.1_CBS6412 | cds-NP_010922.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:163065-164621:+ | gene-YER007W_CBS6413 | rna-NM_001178898.1_CBS6413 | cds-NP_010922.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:162353-163909:+ | gene-YER007W_CENPK1137D | rna-NM_001178898.1_CENPK1137D | cds-NP_010922.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:158880-160436:+ | gene-YER007W_EthanolRed | rna-NM_001178898.1_EthanolRed | cds-NP_010922.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:159140-160696:+ | gene-YER007W_FaliES1 | rna-NM_001178898.1_FaliES1 | cds-NP_010922.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:26107-27663:+ | gene-YER007W_JAY291 | rna-NM_001178898.1_JAY291 | cds-NP_010922.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:162440-163996:+ | gene-YER007W_MUCL30387 | rna-NM_001178898.1_MUCL30387 | cds-NP_010922.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:158961-160517:+ | gene-YER007W_MUCL30388 | rna-NM_001178898.1_MUCL30388 | cds-NP_010922.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:157561-159117:+ | gene-YER007W_MUCL39482 | rna-NM_001178898.1_MUCL39482 | cds-NP_010922.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:163433-164989:+ | gene-YER007W_MUCL42920 | rna-NM_001178898.1_MUCL42920 | cds-NP_010922.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:164526-166082:+ | gene-YER007W_NCIM3186 | rna-NM_001178898.1_NCIM3186 | cds-NP_010922.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:162635-164191:+ | gene-YER007W_NCYC1407 | rna-NM_001178898.1_NCYC1407 | cds-NP_010922.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:166934-168490:+ | gene-YER007W_PE2H3 | rna-NM_001178898.1_PE2H3 | cds-NP_010922.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:162849-164405:+ | gene-YER007W_PE2H4 | rna-NM_001178898.1_PE2H4 | cds-NP_010922.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:164527-166083:+ | gene-YER007W_S288C | rna-NM_001178898.1_S288C | cds-NP_010922.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:77526-79082:- | gene-YER007W_SA1 | rna-NM_001178898.1_SA1 | cds-NP_010922.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:159546-161102:+ | gene-YER007W_ThermosaccDry | rna-NM_001178898.1_ThermosaccDry | cds-NP_010922.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:159025-160581:+ | gene-YER007W_VR1 | rna-NM_001178898.1_VR1 | cds-NP_010922.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:157576-159132:+ | gene-YER007W_ZTW1 | rna-NM_001178898.1_ZTW1 | cds-NP_010922.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:162284-163843:+ | gene-YER007W_Sparadoxus | rna-NM_001178898.1_Sparadoxus | cds-NP_010922.1_Sparadoxus | 86.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |