Gene name: PAB1
Reference locus (S288C): YER165W
Gene biotype: protein_coding
Description: Polyadenylate-binding protein, cytoplasmic and nuclear; Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex; Belongs to the polyadenylate-binding protein type-1 family
Top 10 interactors (score): PBP1 (0.999); TIF4631 (0.999); SUP35 (0.999); CDC33 (0.999); TIF4632 (0.999); SCD6 (0.998); DHH1 (0.998); NAM7 (0.996); TIF3 (0.995); TIF1 (0.993); PAN3 (0.992); CBC2 (0.989); STO1 (0.984); TIF2 (0.981); DCP2 (0.98); CCR4 (0.978); XRN1 (0.977); LSM1 (0.974); PAN2 (0.973); PRT1 (0.97)
Homologues (species, bitscore): PABPC1 (Homo sapiens, 486.1); Pabpc1 (Mus musculus, 487.3); pabpc1a (Danio rerio, 490.0); pabpc1 (Xenopus tropicalis, 474.9); pAbp (Drosophila melanogaster, 433.0); pab-1 (Caenorhabditis elegans, 451.1); PAB2 (Arabidopsis thaliana, 446.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:491928-493661:+ | gene-YER165W_AKU4011 | rna-NM_001179055.1_AKU4011 | cds-NP_011092.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:39714-41447:- | gene-YER165W_BG1 | rna-NM_001179055.1_BG1 | cds-NP_011092.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:504639-506372:+ | gene-YER165W_Bruggeman | rna-NM_001179055.1_Bruggeman | cds-NP_011092.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:491233-492966:+ | gene-YER165W_CAT1 | rna-NM_001179055.1_CAT1 | cds-NP_011092.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:491735-493468:+ | gene-YER165W_CBS1585 | rna-NM_001179055.1_CBS1585 | cds-NP_011092.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:501618-503351:+ | gene-YER165W_CBS436 | rna-NM_001179055.1_CBS436 | cds-NP_011092.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:489712-491445:+ | gene-YER165W_CBS6412 | rna-NM_001179055.1_CBS6412 | cds-NP_011092.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:498281-500014:+ | gene-YER165W_CBS6413 | rna-NM_001179055.1_CBS6413 | cds-NP_011092.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:508144-509877:+ | gene-YER165W_CENPK1137D | rna-NM_001179055.1_CENPK1137D | cds-NP_011092.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:497874-499607:+ | gene-YER165W_EthanolRed | rna-NM_001179055.1_EthanolRed | cds-NP_011092.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:498810-500543:+ | gene-YER165W_FaliES1 | rna-NM_001179055.1_FaliES1 | cds-NP_011092.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:39364-41097:- | gene-YER165W_JAY291 | rna-NM_001179055.1_JAY291 | cds-NP_011092.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:491975-493696:+ | gene-YER165W_MUCL30387 | rna-NM_001179055.1_MUCL30387 | cds-NP_011092.1_MUCL30387 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:494881-496620:+ | gene-YER165W_MUCL30388 | rna-NM_001179055.1_MUCL30388 | cds-NP_011092.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:487693-489426:+ | gene-YER165W_MUCL39482 | rna-NM_001179055.1_MUCL39482 | cds-NP_011092.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:502198-503937:+ | gene-YER165W_MUCL42920 | rna-NM_001179055.1_MUCL42920 | cds-NP_011092.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:510372-512105:+ | gene-YER165W_NCIM3186 | rna-NM_001179055.1_NCIM3186 | cds-NP_011092.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:497149-498882:+ | gene-YER165W_NCYC1407 | rna-NM_001179055.1_NCYC1407 | cds-NP_011092.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:513052-514785:+ | gene-YER165W_PE2H3 | rna-NM_001179055.1_PE2H3 | cds-NP_011092.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:502993-504726:+ | gene-YER165W_PE2H4 | rna-NM_001179055.1_PE2H4 | cds-NP_011092.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:510373-512106:+ | gene-YER165W_S288C | rna-NM_001179055.1_S288C | cds-NP_011092.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:62538-64271:+ | gene-YER165W_SA1 | rna-NM_001179055.1_SA1 | cds-NP_011092.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:499610-501343:+ | gene-YER165W_ThermosaccDry | rna-NM_001179055.1_ThermosaccDry | cds-NP_011092.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:492898-494631:+ | gene-YER165W_VR1 | rna-NM_001179055.1_VR1 | cds-NP_011092.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:12462-14195:+ | gene-YER165W_ZTW1 | rna-NM_001179055.1_ZTW1 | cds-NP_011092.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:500854-502587:+ | gene-YER165W_Sparadoxus | rna-NM_001179055.1_Sparadoxus | cds-NP_011092.1_Sparadoxus | 95.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |