OTO1 (YGR227C-A)

Gene profile

Gene name: OTO1
Reference locus (S288C): YGR227C-A
Gene biotype: protein_coding

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005301.1:914357-914529:- gene-YGR227C-A_AKU4011 rna-NM_001395731.1_AKU4011 cds-NP_001382660.1_AKU4011 98.2 99.4 Mismatch 1 1 0 False False False True False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000021.1:194579-194752:- gene-YGR227C-A_BG1 rna-NM_001395731.1_BG1 cds-NP_001382660.1_BG1 99.4 100.0 Mismatch 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005509.1:922061-922234:- gene-YGR227C-A_Bruggeman rna-NM_001395731.1_Bruggeman cds-NP_001382660.1_Bruggeman 99.4 100.0 Mismatch 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005525.1:920738-920911:- gene-YGR227C-A_CAT1 rna-NM_001395731.1_CAT1 cds-NP_001382660.1_CAT1 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005365.1:917307-917479:- gene-YGR227C-A_CBS1585 rna-NM_001395731.1_CBS1585 cds-NP_001382660.1_CBS1585 98.2 99.4 Mismatch 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005349.1:920986-921159:- gene-YGR227C-A_CBS436 rna-NM_001395731.1_CBS436 cds-NP_001382660.1_CBS436 99.4 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005333.1:908177-908349:- gene-YGR227C-A_CBS6412 rna-NM_001395731.1_CBS6412 cds-NP_001382660.1_CBS6412 98.2 99.4 Mismatch 1 1 0 False False False True False
CBS6413 GCA_001738265.1 Sake Asia CM005317.1:914236-914408:- gene-YGR227C-A_CBS6413 rna-NM_001395731.1_CBS6413 cds-NP_001382660.1_CBS6413 98.2 99.4 Mismatch 1 1 0 False False False True False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001528.1:948634-948807:- gene-YGR227C-A_CENPK1137D rna-NM_001395731.1_CENPK1137D cds-NP_001382660.1_CENPK1137D 100.0 100.0 Mismatch 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005541.1:907074-907247:- gene-YGR227C-A_FaliES1 rna-NM_001395731.1_FaliES1 cds-NP_001382660.1_FaliES1 99.4 100.0 Mismatch 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000076.1:123016-123189:+ gene-YGR227C-A_JAY291 rna-NM_001395731.1_JAY291 cds-NP_001382660.1_JAY291 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005413.1:919976-920149:- gene-YGR227C-A_MUCL30387 rna-NM_001395731.1_MUCL30387 cds-NP_001382660.1_MUCL30387 99.4 100.0 Mismatch 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005445.1:919232-919404:- gene-YGR227C-A_MUCL30388 rna-NM_001395731.1_MUCL30388 cds-NP_001382660.1_MUCL30388 98.2 99.4 Mismatch 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia CM005285.1:912384-912556:- gene-YGR227C-A_MUCL39482 rna-NM_001395731.1_MUCL39482 cds-NP_001382660.1_MUCL39482 98.2 99.4 Mismatch 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe CM005429.1:930936-931109:- gene-YGR227C-A_MUCL42920 rna-NM_001395731.1_MUCL42920 cds-NP_001382660.1_MUCL42920 99.4 100.0 Mismatch 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:949052-949225:- gene-YGR227C-A_NCIM3186 rna-NM_001395731.1_NCIM3186 cds-NP_001382660.1_NCIM3186 98.2 100.0 Mismatch 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005269.1:908036-908208:- gene-YGR227C-A_NCYC1407 rna-NM_001395731.1_NCYC1407 cds-NP_001382660.1_NCYC1407 98.2 99.4 Mismatch 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:933267-933404:- gene-YGR227C-A_PE2H3 rna-NM_001395731.1_PE2H3 cds-NP_001382660.1_PE2H3 76.4 79.3 Unannotated 1 1 0 False False False True False
PE2H4 GCA_905220315.1 Bioethanol South America LR999878.1:938082-938255:- gene-YGR227C-A_PE2H4 rna-NM_001395731.1_PE2H4 cds-NP_001382660.1_PE2H4 100.0 100.0 Mismatch 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:949052-949225:- gene-YGR227C-A_S288C rna-NM_001395731.1_S288C cds-NP_001382660.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000045.1:52282-52419:+ gene-YGR227C-A_SA1 rna-NM_001395731.1_SA1 cds-NP_001382660.1_SA1 76.4 79.3 Unannotated 1 1 0 False False False True False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005493.1:927585-927758:- gene-YGR227C-A_ThermosaccDry rna-NM_001395731.1_ThermosaccDry cds-NP_001382660.1_ThermosaccDry 99.4 100.0 Mismatch 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005461.1:1032403-1032576:- gene-YGR227C-A_VR1 rna-NM_001395731.1_VR1 cds-NP_001382660.1_VR1 100.0 100.0 Mismatch 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000016.1:229020-229193:- gene-YGR227C-A_ZTW1 rna-NM_001395731.1_ZTW1 cds-NP_001382660.1_ZTW1 98.8 100.0 Unannotated 1 1 0 False False False False True

Additional files