Gene name: ODC1
Reference locus (S288C): YPL134C
Gene biotype: protein_coding
Description: Solute carrier family 25 (mitochondrial 2-oxodicarboxylate transporter), member 21; Mitochondrial inner membrane transporter; 2-oxodicarboxylate transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for lysine and glutamate biosynthesis and lysine catabolism; suppresses, in multicopy, an fmc1 null mutation; ODC1 has a paralog, ODC2, that arose from the whole genome duplication
Top 10 interactors (score): ODC2 (0.777); YHM2 (0.632); ACO1 (0.629); AGX1 (0.583); IDP2 (0.553); ACO2 (0.524); PEX11 (0.487); YIG1 (0.485); SAL1 (0.482); ACS1 (0.476); MRPL1 (0.471); LSC1 (0.463); GLN1 (0.45); SDH1 (0.443); FBP1 (0.438); YAT1 (0.437); GDH3 (0.428); GDH2 (0.412); MPC2 (0.41); YMC2 (0.41)
Homologues (species, bitscore): SLC25A21 (Homo sapiens, 167.9); Slc25a21 (Mus musculus, 174.9); slc25a21 (Danio rerio, 182.6); slc25a21 (Xenopus tropicalis, 179.1); CG5254 (Drosophila melanogaster, 203.4); R11.1 (Caenorhabditis elegans, 197.6); mSFC1 (Arabidopsis thaliana, 131.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:276225-277157:- | gene-YPL134C_AKU4011 | rna-NM_001183948.1_AKU4011 | cds-NP_015191.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:481912-482844:- | gene-YPL134C_BG1 | rna-NM_001183948.1_BG1 | cds-NP_015191.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:302220-303152:- | gene-YPL134C_Bruggeman | rna-NM_001183948.1_Bruggeman | cds-NP_015191.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:298896-299828:- | gene-YPL134C_CAT1 | rna-NM_001183948.1_CAT1 | cds-NP_015191.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:280296-281228:- | gene-YPL134C_CBS1585 | rna-NM_001183948.1_CBS1585 | cds-NP_015191.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:294962-295894:- | gene-YPL134C_CBS436 | rna-NM_001183948.1_CBS436 | cds-NP_015191.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:284967-285899:- | gene-YPL134C_CBS6412 | rna-NM_001183948.1_CBS6412 | cds-NP_015191.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:276932-277864:- | gene-YPL134C_CBS6413 | rna-NM_001183948.1_CBS6413 | cds-NP_015191.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:298473-299405:- | gene-YPL134C_CENPK1137D | rna-NM_001183948.1_CENPK1137D | cds-NP_015191.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:274911-275843:- | gene-YPL134C_EthanolRed | rna-NM_001183948.1_EthanolRed | cds-NP_015191.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:282503-283435:- | gene-YPL134C_FaliES1 | rna-NM_001183948.1_FaliES1 | cds-NP_015191.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:82409-83341:+ | gene-YPL134C_JAY291 | rna-NM_001183948.1_JAY291 | cds-NP_015191.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:293464-294396:- | gene-YPL134C_MUCL30387 | rna-NM_001183948.1_MUCL30387 | cds-NP_015191.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:291478-292410:- | gene-YPL134C_MUCL30388 | rna-NM_001183948.1_MUCL30388 | cds-NP_015191.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:273625-274557:- | gene-YPL134C_MUCL39482 | rna-NM_001183948.1_MUCL39482 | cds-NP_015191.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:330862-331794:- | gene-YPL134C_MUCL42920 | rna-NM_001183948.1_MUCL42920 | cds-NP_015191.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:298554-299486:- | gene-YPL134C_NCIM3186 | rna-NM_001183948.1_NCIM3186 | cds-NP_015191.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:280080-281012:- | gene-YPL134C_NCYC1407 | rna-NM_001183948.1_NCYC1407 | cds-NP_015191.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:287534-288466:- | gene-YPL134C_PE2H3 | rna-NM_001183948.1_PE2H3 | cds-NP_015191.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:287162-288094:- | gene-YPL134C_PE2H4 | rna-NM_001183948.1_PE2H4 | cds-NP_015191.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:298571-299503:- | gene-YPL134C_S288C | rna-NM_001183948.1_S288C | cds-NP_015191.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:74179-75111:+ | gene-YPL134C_SA1 | rna-NM_001183948.1_SA1 | cds-NP_015191.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:282301-283233:- | gene-YPL134C_ThermosaccDry | rna-NM_001183948.1_ThermosaccDry | cds-NP_015191.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:297281-298213:- | gene-YPL134C_VR1 | rna-NM_001183948.1_VR1 | cds-NP_015191.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:281631-282563:- | gene-YPL134C_ZTW1 | rna-NM_001183948.1_ZTW1 | cds-NP_015191.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:283327-284259:- | gene-YPL134C_Sparadoxus | rna-NM_001183948.1_Sparadoxus | cds-NP_015191.1_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |