Gene name: OCA4
Reference locus (S288C): YCR095C
Gene biotype: protein_coding
Description: Protein oca4; Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts
Top 10 interactors (score): OCA5 (0.966); OCA2 (0.959); SIW14 (0.952); YCR024C-B (0.847); YCL042W (0.847); OCA1 (0.835); OCA6 (0.776); YCL001W-A (0.748); HMRA2 (0.673); DLS1 (0.65); FIG2 (0.616); HMRA1 (0.575); ITC1 (0.572); VBA3 (0.569); DIA4 (0.565); GEX1 (0.487); YCL068C (0.483); YTA7 (0.452); SUI2 (0.45); GCN2 (0.409)
Homologues (species, bitscore): PFA-DSP1 (Arabidopsis thaliana, 65.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:283110-284198:- | gene-YCR095C_AKU4011 | rna-NM_001178801.1_AKU4011 | cds-NP_010019.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:141412-142500:- | gene-YCR095C_BG1 | rna-NM_001178801.1_BG1 | cds-NP_010019.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:279922-281010:- | gene-YCR095C_Bruggeman | rna-NM_001178801.1_Bruggeman | cds-NP_010019.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:289917-291005:- | gene-YCR095C_CAT1 | rna-NM_001178801.1_CAT1 | cds-NP_010019.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:277857-278945:- | gene-YCR095C_CBS1585 | rna-NM_001178801.1_CBS1585 | cds-NP_010019.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:289249-290337:- | gene-YCR095C_CBS436 | rna-NM_001178801.1_CBS436 | cds-NP_010019.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:269004-270092:- | gene-YCR095C_CBS6412 | rna-NM_001178801.1_CBS6412 | cds-NP_010019.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:283556-284644:- | gene-YCR095C_CBS6413 | rna-NM_001178801.1_CBS6413 | cds-NP_010019.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:287401-288489:- | gene-YCR095C_CENPK1137D | rna-NM_001178801.1_CENPK1137D | cds-NP_010019.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:278755-279843:- | gene-YCR095C_EthanolRed | rna-NM_001178801.1_EthanolRed | cds-NP_010019.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:284855-285943:- | gene-YCR095C_FaliES1 | rna-NM_001178801.1_FaliES1 | cds-NP_010019.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:3868-4956:+ | gene-YCR095C_JAY291 | rna-NM_001178801.1_JAY291 | cds-NP_010019.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:276723-277811:- | gene-YCR095C_MUCL30387 | rna-NM_001178801.1_MUCL30387 | cds-NP_010019.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:275544-276632:- | gene-YCR095C_MUCL30388 | rna-NM_001178801.1_MUCL30388 | cds-NP_010019.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:284501-285589:- | gene-YCR095C_MUCL39482 | rna-NM_001178801.1_MUCL39482 | cds-NP_010019.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:280712-281800:- | gene-YCR095C_MUCL42920 | rna-NM_001178801.1_MUCL42920 | cds-NP_010019.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:287802-288890:- | gene-YCR095C_NCIM3186 | rna-NM_001178801.1_NCIM3186 | cds-NP_010019.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:285144-286232:- | gene-YCR095C_NCYC1407 | rna-NM_001178801.1_NCYC1407 | cds-NP_010019.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:299430-300518:- | gene-YCR095C_PE2H3 | rna-NM_001178801.1_PE2H3 | cds-NP_010019.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:287982-289070:- | gene-YCR095C_PE2H4 | rna-NM_001178801.1_PE2H4 | cds-NP_010019.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:288170-289258:- | gene-YCR095C_S288C | rna-NM_001178801.1_S288C | cds-NP_010019.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:88156-89244:- | gene-YCR095C_SA1 | rna-NM_001178801.1_SA1 | cds-NP_010019.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:284809-285897:- | gene-YCR095C_ThermosaccDry | rna-NM_001178801.1_ThermosaccDry | cds-NP_010019.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:294970-296058:- | gene-YCR095C_VR1 | rna-NM_001178801.1_VR1 | cds-NP_010019.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:281513-282601:- | gene-YCR095C_ZTW1 | rna-NM_001178801.1_ZTW1 | cds-NP_010019.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:315882-316970:- | gene-YCR095C_Sparadoxus | rna-NM_001178801.1_Sparadoxus | cds-NP_010019.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |