Gene name: NYV1
Reference locus (S288C): YLR093C
Gene biotype: protein_coding
Description: v-SNARE component of the vacuolar SNARE complex; involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane
Top 10 interactors (score): VTI1 (0.999); VPS33 (0.999); VAM7 (0.999); VAM6 (0.999); YKT6 (0.999); VAM3 (0.999); SEC17 (0.997); SSO1 (0.994); SEC9 (0.993); SEC22 (0.992); SED5 (0.991); BET1 (0.991); GOS1 (0.986); SPO20 (0.984); BOS1 (0.976); SEC18 (0.973); USE1 (0.972); UFE1 (0.972); SFT1 (0.969); TLG1 (0.96)
Homologues (species, bitscore): VAMP1 (Homo sapiens, 54.3); Vamp1 (Mus musculus, 55.8); vamp1 (Danio rerio, 63.9); vamp3 (Xenopus tropicalis, 60.1); snb-1 (Caenorhabditis elegans, 52.4); VAMP713 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:308985-309887:- | gene-YLR093C_AKU4011 | rna-NM_001181980.1_AKU4011 | cds-NP_013194.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:272151-273053:- | gene-YLR093C_BG1 | rna-NM_001181980.1_BG1 | cds-NP_013194.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:318888-319790:- | gene-YLR093C_Bruggeman | rna-NM_001181980.1_Bruggeman | cds-NP_013194.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:319208-320110:- | gene-YLR093C_CAT1 | rna-NM_001181980.1_CAT1 | cds-NP_013194.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:316099-317001:- | gene-YLR093C_CBS1585 | rna-NM_001181980.1_CBS1585 | cds-NP_013194.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:306716-307618:- | gene-YLR093C_CBS436 | rna-NM_001181980.1_CBS436 | cds-NP_013194.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:314540-315442:- | gene-YLR093C_CBS6412 | rna-NM_001181980.1_CBS6412 | cds-NP_013194.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:316371-317273:- | gene-YLR093C_CBS6413 | rna-NM_001181980.1_CBS6413 | cds-NP_013194.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:311518-312420:- | gene-YLR093C_CENPK1137D | rna-NM_001181980.1_CENPK1137D | cds-NP_013194.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:308504-309406:- | gene-YLR093C_EthanolRed | rna-NM_001181980.1_EthanolRed | cds-NP_013194.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:308380-309282:- | gene-YLR093C_FaliES1 | rna-NM_001181980.1_FaliES1 | cds-NP_013194.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:83315-84217:- | gene-YLR093C_JAY291 | rna-NM_001181980.1_JAY291 | cds-NP_013194.2_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:316252-317154:- | gene-YLR093C_MUCL30387 | rna-NM_001181980.1_MUCL30387 | cds-NP_013194.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:323902-324804:- | gene-YLR093C_MUCL30388 | rna-NM_001181980.1_MUCL30388 | cds-NP_013194.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:316617-317519:- | gene-YLR093C_MUCL39482 | rna-NM_001181980.1_MUCL39482 | cds-NP_013194.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:316537-317439:- | gene-YLR093C_MUCL42920 | rna-NM_001181980.1_MUCL42920 | cds-NP_013194.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:326487-327389:- | gene-YLR093C_NCIM3186 | rna-NM_001181980.1_NCIM3186 | cds-NP_013194.2_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:308688-309590:- | gene-YLR093C_NCYC1407 | rna-NM_001181980.1_NCYC1407 | cds-NP_013194.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:314486-315388:- | gene-YLR093C_PE2H3 | rna-NM_001181980.1_PE2H3 | cds-NP_013194.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:314227-315129:- | gene-YLR093C_PE2H4 | rna-NM_001181980.1_PE2H4 | cds-NP_013194.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:326513-327415:- | gene-YLR093C_S288C | rna-NM_001181980.1_S288C | cds-NP_013194.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:46707-47609:+ | gene-YLR093C_SA1 | rna-NM_001181980.1_SA1 | cds-NP_013194.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:308556-309458:- | gene-YLR093C_ThermosaccDry | rna-NM_001181980.1_ThermosaccDry | cds-NP_013194.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:322738-323640:- | gene-YLR093C_VR1 | rna-NM_001181980.1_VR1 | cds-NP_013194.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:307936-308838:- | gene-YLR093C_ZTW1 | rna-NM_001181980.1_ZTW1 | cds-NP_013194.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:316781-317687:- | gene-YLR093C_Sparadoxus | rna-NM_001181980.1_Sparadoxus | cds-NP_013194.2_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |