Gene name: NVJ3
Reference locus (S288C): YDR179W-A
Gene biotype: protein_coding
Description: Uncharacterized protein YDR179W-A; Protein with a potential role in tethering ER and vacuoles; localizes to nucleus-vacuole junctions in an Mdm1p-dependent manner; contains a lipid-binding PXA domain
Top 10 interactors (score): NVJ2 (0.845); MDM1 (0.817); NVJ1 (0.774); HRI1 (0.749); YHR020W (0.747); VAC8 (0.714); ARD1 (0.65); VPS13 (0.623); VID24 (0.62); OLI1 (0.595); PEX21 (0.572); SNX3 (0.568); TSC13 (0.561); LAM6 (0.497); RPL12A (0.489); RPL12B (0.487); SCS2 (0.45); MUP1 (0.45); ALD2 (0.45); PUP1 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:787960-789351:+ | gene-YDR179W-A_AKU4011 | rna-NM_001180487.3_AKU4011 | cds-NP_010465.4_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:336447-337838:- | gene-YDR179W-A_BG1 | rna-NM_001180487.3_BG1 | cds-NP_010465.4_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:820382-821773:+ | gene-YDR179W-A_Bruggeman | rna-NM_001180487.3_Bruggeman | cds-NP_010465.4_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:807627-809018:+ | gene-YDR179W-A_CAT1 | rna-NM_001180487.3_CAT1 | cds-NP_010465.4_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:778327-779718:+ | gene-YDR179W-A_CBS1585 | rna-NM_001180487.3_CBS1585 | cds-NP_010465.4_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:807309-808700:+ | gene-YDR179W-A_CBS436 | rna-NM_001180487.3_CBS436 | cds-NP_010465.4_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:775132-776523:+ | gene-YDR179W-A_CBS6412 | rna-NM_001180487.3_CBS6412 | cds-NP_010465.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:805675-807066:+ | gene-YDR179W-A_CBS6413 | rna-NM_001180487.3_CBS6413 | cds-NP_010465.4_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:818239-819630:+ | gene-YDR179W-A_CENPK1137D | rna-NM_001180487.3_CENPK1137D | cds-NP_010465.4_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:788728-790119:+ | gene-YDR179W-A_EthanolRed | rna-NM_001180487.3_EthanolRed | cds-NP_010465.4_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:796940-798331:+ | gene-YDR179W-A_FaliES1 | rna-NM_001180487.3_FaliES1 | cds-NP_010465.4_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:51033-52424:- | gene-YDR179W-A_JAY291 | rna-NM_001180487.3_JAY291 | cds-NP_010465.4_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:806028-807419:+ | gene-YDR179W-A_MUCL30387 | rna-NM_001180487.3_MUCL30387 | cds-NP_010465.4_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:794270-795661:+ | gene-YDR179W-A_MUCL30388 | rna-NM_001180487.3_MUCL30388 | cds-NP_010465.4_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:779774-781165:+ | gene-YDR179W-A_MUCL39482 | rna-NM_001180487.3_MUCL39482 | cds-NP_010465.4_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:718472-719863:+ | gene-YDR179W-A_MUCL42920 | rna-NM_001180487.3_MUCL42920 | cds-NP_010465.4_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:819356-820747:+ | gene-YDR179W-A_NCIM3186 | rna-NM_001180487.3_NCIM3186 | cds-NP_010465.4_NCIM3186 | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:782907-784298:+ | gene-YDR179W-A_NCYC1407 | rna-NM_001180487.3_NCYC1407 | cds-NP_010465.4_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:799633-801024:+ | gene-YDR179W-A_PE2H3 | rna-NM_001180487.3_PE2H3 | cds-NP_010465.4_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:798938-800329:+ | gene-YDR179W-A_PE2H4 | rna-NM_001180487.3_PE2H4 | cds-NP_010465.4_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:819433-820824:+ | gene-YDR179W-A_S288C | rna-NM_001180487.3_S288C | cds-NP_010465.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:165144-166535:+ | gene-YDR179W-A_SA1 | rna-NM_001180487.3_SA1 | cds-NP_010465.4_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:795095-796486:+ | gene-YDR179W-A_ThermosaccDry | rna-NM_001180487.3_ThermosaccDry | cds-NP_010465.4_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:810322-811713:+ | gene-YDR179W-A_VR1 | rna-NM_001180487.3_VR1 | cds-NP_010465.4_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:57806-59197:+ | gene-YDR179W-A_ZTW1 | rna-NM_001180487.3_ZTW1 | cds-NP_010465.4_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:800238-801629:+ | gene-YDR179W-A_Sparadoxus | rna-NM_001180487.3_Sparadoxus | cds-NP_010465.4_Sparadoxus | 85.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |