Gene name: NUP85
Reference locus (S288C): YJR042W
Gene biotype: protein_coding
Description: Nucleoporin NUP85; Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP85 aka NUP75
Top 10 interactors (score): NUP120 (0.999); NUP133 (0.999); SEC13 (0.999); NUP84 (0.999); NUP145 (0.999); SEH1 (0.999); MEX67 (0.999); NIC96 (0.996); NSP1 (0.994); NUP192 (0.994); NUP57 (0.989); NUP116 (0.989); NUP188 (0.985); NUP49 (0.984); NUP157 (0.982); NUP170 (0.981); NUP2 (0.98); NUP100 (0.98); GLE1 (0.977); GLE2 (0.975)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:485754-487988:+ | gene-YJR042W_AKU4011 | rna-NM_001181700.1_AKU4011 | cds-NP_012576.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:124966-127200:- | gene-YJR042W_BG1 | rna-NM_001181700.1_BG1 | cds-NP_012576.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:499791-502025:+ | gene-YJR042W_Bruggeman | rna-NM_001181700.1_Bruggeman | cds-NP_012576.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:503720-505954:+ | gene-YJR042W_CAT1 | rna-NM_001181700.1_CAT1 | cds-NP_012576.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:497333-499567:+ | gene-YJR042W_CBS1585 | rna-NM_001181700.1_CBS1585 | cds-NP_012576.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:516282-518516:+ | gene-YJR042W_CBS436 | rna-NM_001181700.1_CBS436 | cds-NP_012576.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:485539-487773:+ | gene-YJR042W_CBS6412 | rna-NM_001181700.1_CBS6412 | cds-NP_012576.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:487784-490018:+ | gene-YJR042W_CBS6413 | rna-NM_001181700.1_CBS6413 | cds-NP_012576.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:496423-498657:+ | gene-YJR042W_CENPK1137D | rna-NM_001181700.1_CENPK1137D | cds-NP_012576.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:490684-492918:+ | gene-YJR042W_EthanolRed | rna-NM_001181700.1_EthanolRed | cds-NP_012576.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:501901-504135:+ | gene-YJR042W_FaliES1 | rna-NM_001181700.1_FaliES1 | cds-NP_012576.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000250.1:16749-18983:+ | gene-YJR042W_JAY291 | rna-NM_001181700.1_JAY291 | cds-NP_012576.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:500101-502335:+ | gene-YJR042W_MUCL30387 | rna-NM_001181700.1_MUCL30387 | cds-NP_012576.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:496648-498882:+ | gene-YJR042W_MUCL30388 | rna-NM_001181700.1_MUCL30388 | cds-NP_012576.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:490793-493027:+ | gene-YJR042W_MUCL39482 | rna-NM_001181700.1_MUCL39482 | cds-NP_012576.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:496055-498289:+ | gene-YJR042W_MUCL42920 | rna-NM_001181700.1_MUCL42920 | cds-NP_012576.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:514034-516268:+ | gene-YJR042W_NCIM3186 | rna-NM_001181700.1_NCIM3186 | cds-NP_012576.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:488636-490870:+ | gene-YJR042W_NCYC1407 | rna-NM_001181700.1_NCYC1407 | cds-NP_012576.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:506971-509205:+ | gene-YJR042W_PE2H3 | rna-NM_001181700.1_PE2H3 | cds-NP_012576.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:500667-502901:+ | gene-YJR042W_PE2H4 | rna-NM_001181700.1_PE2H4 | cds-NP_012576.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:514055-516289:+ | gene-YJR042W_S288C | rna-NM_001181700.1_S288C | cds-NP_012576.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:298561-300795:+ | gene-YJR042W_SA1 | rna-NM_001181700.1_SA1 | cds-NP_012576.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:495589-497823:+ | gene-YJR042W_ThermosaccDry | rna-NM_001181700.1_ThermosaccDry | cds-NP_012576.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:498069-500303:+ | gene-YJR042W_VR1 | rna-NM_001181700.1_VR1 | cds-NP_012576.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:475474-477708:+ | gene-YJR042W_ZTW1 | rna-NM_001181700.1_ZTW1 | cds-NP_012576.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:500193-502427:+ | gene-YJR042W_Sparadoxus | rna-NM_001181700.1_Sparadoxus | cds-NP_012576.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |