Gene name: NUP84
Reference locus (S288C): YDL116W
Gene biotype: protein_coding
Description: Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP107
Top 10 interactors (score): SEH1 (0.999); NUP145 (0.999); NUP116 (0.999); MEX67 (0.999); NUP100 (0.999); NIC96 (0.999); NUP120 (0.999); SEC13 (0.999); NUP85 (0.999); NUP133 (0.999); NUP170 (0.998); NUP57 (0.998); NSP1 (0.998); NUP2 (0.997); NUP159 (0.995); NUP1 (0.995); NUP192 (0.994); NUP157 (0.993); GLE1 (0.987); CFT1 (0.987)
Homologues (species, bitscore): NUP107 (Homo sapiens, 75.9); Nup107 (Mus musculus, 72.0); nup107 (Danio rerio, 79.0); nup107 (Xenopus tropicalis, 84.0); Nup107 (Drosophila melanogaster, 86.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:236191-238371:+ | gene-YDL116W_AKU4011 | rna-NM_001180175.1_AKU4011 | cds-NP_010167.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:311583-313763:- | gene-YDL116W_BG1 | rna-NM_001180175.1_BG1 | cds-NP_010167.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:253597-255777:+ | gene-YDL116W_Bruggeman | rna-NM_001180175.1_Bruggeman | cds-NP_010167.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:250340-252520:+ | gene-YDL116W_CAT1 | rna-NM_001180175.1_CAT1 | cds-NP_010167.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:234451-236631:+ | gene-YDL116W_CBS1585 | rna-NM_001180175.1_CBS1585 | cds-NP_010167.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:251106-253286:+ | gene-YDL116W_CBS436 | rna-NM_001180175.1_CBS436 | cds-NP_010167.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:232877-235057:+ | gene-YDL116W_CBS6412 | rna-NM_001180175.1_CBS6412 | cds-NP_010167.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:252612-254792:+ | gene-YDL116W_CBS6413 | rna-NM_001180175.1_CBS6413 | cds-NP_010167.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:250338-252518:+ | gene-YDL116W_CENPK1137D | rna-NM_001180175.1_CENPK1137D | cds-NP_010167.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:247216-249396:+ | gene-YDL116W_EthanolRed | rna-NM_001180175.1_EthanolRed | cds-NP_010167.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:253186-255366:+ | gene-YDL116W_FaliES1 | rna-NM_001180175.1_FaliES1 | cds-NP_010167.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:23228-25408:+ | gene-YDL116W_JAY291 | rna-NM_001180175.1_JAY291 | cds-NP_010167.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:251384-253564:+ | gene-YDL116W_MUCL30387 | rna-NM_001180175.1_MUCL30387 | cds-NP_010167.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:242142-244322:+ | gene-YDL116W_MUCL30388 | rna-NM_001180175.1_MUCL30388 | cds-NP_010167.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:235557-237737:+ | gene-YDL116W_MUCL39482 | rna-NM_001180175.1_MUCL39482 | cds-NP_010167.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:157336-159516:+ | gene-YDL116W_MUCL42920 | rna-NM_001180175.1_MUCL42920 | cds-NP_010167.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:251489-253669:+ | gene-YDL116W_NCIM3186 | rna-NM_001180175.1_NCIM3186 | cds-NP_010167.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:235585-237765:+ | gene-YDL116W_NCYC1407 | rna-NM_001180175.1_NCYC1407 | cds-NP_010167.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:242339-244519:+ | gene-YDL116W_PE2H3 | rna-NM_001180175.1_PE2H3 | cds-NP_010167.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:242343-244523:+ | gene-YDL116W_PE2H4 | rna-NM_001180175.1_PE2H4 | cds-NP_010167.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:251566-253746:+ | gene-YDL116W_S288C | rna-NM_001180175.1_S288C | cds-NP_010167.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:181167-183347:- | gene-YDL116W_SA1 | rna-NM_001180175.1_SA1 | cds-NP_010167.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:252697-254877:+ | gene-YDL116W_ThermosaccDry | rna-NM_001180175.1_ThermosaccDry | cds-NP_010167.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:254801-256981:+ | gene-YDL116W_VR1 | rna-NM_001180175.1_VR1 | cds-NP_010167.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:250626-252806:+ | gene-YDL116W_ZTW1 | rna-NM_001180175.1_ZTW1 | cds-NP_010167.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:252773-254953:+ | gene-YDL116W_Sparadoxus | rna-NM_001180175.1_Sparadoxus | cds-NP_010167.1_Sparadoxus | 88.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |