Gene name: NUP82
Reference locus (S288C): YJL061W
Gene biotype: protein_coding
Description: Linker nucleoporin component of the nuclear pore complex (NPC); also part of the NPC cytoplasmic filaments; contributes to nucleocytoplasmic transport and NPC biogenesis; forms stable associations with three FG-nucleoporins (Nsp1p, Nup159p, and Nup116p); relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): NUP116 (0.999); NUP159 (0.999); GLE1 (0.993); NIC96 (0.985); GLE2 (0.984); NUP42 (0.984); NUP1 (0.982); NUP145 (0.975); NUP85 (0.975); NUP100 (0.975); NUP120 (0.97); MEX67 (0.969); NUP188 (0.969); NSP1 (0.967); NUP57 (0.961); NUP170 (0.959); NUP84 (0.959); SEH1 (0.957); NDC1 (0.957); NUP2 (0.95)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:302878-305019:+ | gene-YJL061W_AKU4011 | rna-NM_001181494.1_AKU4011 | cds-NP_012474.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:309493-311634:- | gene-YJL061W_BG1 | rna-NM_001181494.1_BG1 | cds-NP_012474.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:315413-317554:+ | gene-YJL061W_Bruggeman | rna-NM_001181494.1_Bruggeman | cds-NP_012474.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:319523-321664:+ | gene-YJL061W_CAT1 | rna-NM_001181494.1_CAT1 | cds-NP_012474.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:314532-316673:+ | gene-YJL061W_CBS1585 | rna-NM_001181494.1_CBS1585 | cds-NP_012474.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:332542-334683:+ | gene-YJL061W_CBS436 | rna-NM_001181494.1_CBS436 | cds-NP_012474.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:303636-305777:+ | gene-YJL061W_CBS6412 | rna-NM_001181494.1_CBS6412 | cds-NP_012474.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:304983-307124:+ | gene-YJL061W_CBS6413 | rna-NM_001181494.1_CBS6413 | cds-NP_012474.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:302484-304625:+ | gene-YJL061W_CENPK1137D | rna-NM_001181494.1_CENPK1137D | cds-NP_012474.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:306714-308855:+ | gene-YJL061W_EthanolRed | rna-NM_001181494.1_EthanolRed | cds-NP_012474.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:318289-320430:+ | gene-YJL061W_FaliES1 | rna-NM_001181494.1_FaliES1 | cds-NP_012474.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:115880-118021:+ | gene-YJL061W_JAY291 | rna-NM_001181494.1_JAY291 | cds-NP_012474.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:316569-318710:+ | gene-YJL061W_MUCL30387 | rna-NM_001181494.1_MUCL30387 | cds-NP_012474.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:312605-314746:+ | gene-YJL061W_MUCL30388 | rna-NM_001181494.1_MUCL30388 | cds-NP_012474.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:307286-309427:+ | gene-YJL061W_MUCL39482 | rna-NM_001181494.1_MUCL39482 | cds-NP_012474.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:313937-316078:+ | gene-YJL061W_MUCL42920 | rna-NM_001181494.1_MUCL42920 | cds-NP_012474.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:319995-322136:+ | gene-YJL061W_NCIM3186 | rna-NM_001181494.1_NCIM3186 | cds-NP_012474.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:305982-308123:+ | gene-YJL061W_NCYC1407 | rna-NM_001181494.1_NCYC1407 | cds-NP_012474.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:318334-320475:+ | gene-YJL061W_PE2H3 | rna-NM_001181494.1_PE2H3 | cds-NP_012474.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:317978-320119:+ | gene-YJL061W_PE2H4 | rna-NM_001181494.1_PE2H4 | cds-NP_012474.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:320016-322157:+ | gene-YJL061W_S288C | rna-NM_001181494.1_S288C | cds-NP_012474.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:115897-118038:+ | gene-YJL061W_SA1 | rna-NM_001181494.1_SA1 | cds-NP_012474.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:311702-313843:+ | gene-YJL061W_ThermosaccDry | rna-NM_001181494.1_ThermosaccDry | cds-NP_012474.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:313895-316036:+ | gene-YJL061W_VR1 | rna-NM_001181494.1_VR1 | cds-NP_012474.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:293080-295221:+ | gene-YJL061W_ZTW1 | rna-NM_001181494.1_ZTW1 | cds-NP_012474.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:317120-319261:+ | gene-YJL061W_Sparadoxus | rna-NM_001181494.1_Sparadoxus | cds-NP_012474.1_Sparadoxus | 86.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |