Gene name: NUP60
Reference locus (S288C): YAR002W
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier and is involved in gene tethering at the nuclear periphery; relocalizes to the cytosol in response to hypoxia; both NUP1 and NUP60 are homologous to human NUP153
Top 10 interactors (score): NUP2 (0.999); NUP1 (0.998); MLP2 (0.998); NUP100 (0.997); MLP1 (0.992); NUP49 (0.991); NUP57 (0.991); NUP42 (0.991); NUP116 (0.989); NUP159 (0.989); KAP95 (0.987); SRP1 (0.983); NUP145 (0.982); NUP53 (0.98); NUP133 (0.974); ASM4 (0.973); NSP1 (0.967); NIC96 (0.961); ULP1 (0.96); ESC1 (0.96)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:137686-139305:+ | gene-YAR002W_AKU4011 | rna-NM_001178209.1_AKU4011 | cds-NP_009401.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000103.1:146-1765:+ | gene-YAR002W_BG1 | rna-NM_001178209.1_BG1 | cds-NP_009401.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:152472-154091:+ | gene-YAR002W_Bruggeman | rna-NM_001178209.1_Bruggeman | cds-NP_009401.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:139072-140691:+ | gene-YAR002W_CAT1 | rna-NM_001178209.1_CAT1 | cds-NP_009401.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:150384-152003:+ | gene-YAR002W_CBS1585 | rna-NM_001178209.1_CBS1585 | cds-NP_009401.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:150694-152313:+ | gene-YAR002W_CBS436 | rna-NM_001178209.1_CBS436 | cds-NP_009401.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:763128-764747:+ | gene-YAR002W_CBS6412 | rna-NM_001178209.1_CBS6412 | cds-NP_009401.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:148652-150271:+ | gene-YAR002W_CBS6413 | rna-NM_001178209.1_CBS6413 | cds-NP_009401.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:152163-153782:+ | gene-YAR002W_CENPK1137D | rna-NM_001178209.1_CENPK1137D | cds-NP_009401.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:138242-139861:+ | gene-YAR002W_EthanolRed | rna-NM_001178209.1_EthanolRed | cds-NP_009401.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:153903-155522:+ | gene-YAR002W_FaliES1 | rna-NM_001178209.1_FaliES1 | cds-NP_009401.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000248.1:11273-12892:+ | gene-YAR002W_JAY291 | rna-NM_001178209.1_JAY291 | cds-NP_009401.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:153386-155005:+ | gene-YAR002W_MUCL30387 | rna-NM_001178209.1_MUCL30387 | cds-NP_009401.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:150891-152510:+ | gene-YAR002W_MUCL30388 | rna-NM_001178209.1_MUCL30388 | cds-NP_009401.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:149640-151259:+ | gene-YAR002W_MUCL39482 | rna-NM_001178209.1_MUCL39482 | cds-NP_009401.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:151790-153409:+ | gene-YAR002W_MUCL42920 | rna-NM_001178209.1_MUCL42920 | cds-NP_009401.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:152134-153753:+ | gene-YAR002W_NCIM3186 | rna-NM_001178209.1_NCIM3186 | cds-NP_009401.1_NCIM3186 | 90.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:137050-138669:+ | gene-YAR002W_NCYC1407 | rna-NM_001178209.1_NCYC1407 | cds-NP_009401.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:138972-140591:+ | gene-YAR002W_PE2H3 | rna-NM_001178209.1_PE2H3 | cds-NP_009401.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:138691-140310:+ | gene-YAR002W_PE2H4 | rna-NM_001178209.1_PE2H4 | cds-NP_009401.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:152257-153876:+ | gene-YAR002W_S288C | rna-NM_001178209.1_S288C | cds-NP_009401.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000100.1:10989-12608:+ | gene-YAR002W_SA1 | rna-NM_001178209.1_SA1 | cds-NP_009401.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:152908-154527:+ | gene-YAR002W_ThermosaccDry | rna-NM_001178209.1_ThermosaccDry | cds-NP_009401.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:157462-159081:+ | gene-YAR002W_VR1 | rna-NM_001178209.1_VR1 | cds-NP_009401.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:124731-126350:+ | gene-YAR002W_ZTW1 | rna-NM_001178209.1_ZTW1 | cds-NP_009401.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:142289-143908:+ | gene-YAR002W_Sparadoxus | rna-NM_001178209.1_Sparadoxus | cds-NP_009401.1_Sparadoxus | 86.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |