Gene name: NUP57
Reference locus (S288C): YGR119C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier; found in stable complex with Nic96p and two other FG-nucleoproteins (Nsp1p and Nup49p)
Top 10 interactors (score): NUP2 (0.999); NUP42 (0.999); NUP49 (0.999); NSP1 (0.999); NIC96 (0.999); NUP159 (0.999); MEX67 (0.998); NUP84 (0.998); NUP192 (0.998); NUP1 (0.996); GLE2 (0.996); NUP100 (0.995); ASM4 (0.992); NUP145 (0.991); NUP60 (0.991); GLE1 (0.991); NUP116 (0.99); NUP53 (0.99); NUP85 (0.989); NUP170 (0.987)
Homologues (species, bitscore): NUP214 (Homo sapiens, 57.8); Nup98 (Mus musculus, 57.8); nup214 (Danio rerio, 72.0); nup214 (Xenopus tropicalis, 55.1); Nup54 (Drosophila melanogaster, 80.1); npp-10 (Caenorhabditis elegans, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:707365-708990:- | gene-YGR119C_AKU4011 | rna-NM_001181248.1_AKU4011 | cds-NP_011634.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000188.1:15836-17464:- | gene-YGR119C_BG1 | rna-NM_001181248.1_BG1 | cds-NP_011634.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:709027-710655:- | gene-YGR119C_Bruggeman | rna-NM_001181248.1_Bruggeman | cds-NP_011634.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:707254-708882:- | gene-YGR119C_CAT1 | rna-NM_001181248.1_CAT1 | cds-NP_011634.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:708355-709980:- | gene-YGR119C_CBS1585 | rna-NM_001181248.1_CBS1585 | cds-NP_011634.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:709978-711603:- | gene-YGR119C_CBS436 | rna-NM_001181248.1_CBS436 | cds-NP_011634.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:700024-701649:- | gene-YGR119C_CBS6412 | rna-NM_001181248.1_CBS6412 | cds-NP_011634.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:704958-706583:- | gene-YGR119C_CBS6413 | rna-NM_001181248.1_CBS6413 | cds-NP_011634.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:727764-729389:- | gene-YGR119C_CENPK1137D | rna-NM_001181248.1_CENPK1137D | cds-NP_011634.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:694448-696073:- | gene-YGR119C_EthanolRed | rna-NM_001181248.1_EthanolRed | cds-NP_011634.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:698257-699882:- | gene-YGR119C_FaliES1 | rna-NM_001181248.1_FaliES1 | cds-NP_011634.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000309.1:628-2256:- | gene-YGR119C_JAY291 | rna-NM_001181248.1_JAY291 | cds-NP_011634.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:708454-710079:- | gene-YGR119C_MUCL30387 | rna-NM_001181248.1_MUCL30387 | cds-NP_011634.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:708841-710469:- | gene-YGR119C_MUCL30388 | rna-NM_001181248.1_MUCL30388 | cds-NP_011634.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:704082-705707:- | gene-YGR119C_MUCL39482 | rna-NM_001181248.1_MUCL39482 | cds-NP_011634.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:713851-715479:- | gene-YGR119C_MUCL42920 | rna-NM_001181248.1_MUCL42920 | cds-NP_011634.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:728046-729671:- | gene-YGR119C_NCIM3186 | rna-NM_001181248.1_NCIM3186 | cds-NP_011634.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:698775-700400:- | gene-YGR119C_NCYC1407 | rna-NM_001181248.1_NCYC1407 | cds-NP_011634.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:712348-713976:- | gene-YGR119C_PE2H3 | rna-NM_001181248.1_PE2H3 | cds-NP_011634.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:717466-719094:- | gene-YGR119C_PE2H4 | rna-NM_001181248.1_PE2H4 | cds-NP_011634.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:728046-729671:- | gene-YGR119C_S288C | rna-NM_001181248.1_S288C | cds-NP_011634.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:149379-151007:- | gene-YGR119C_SA1 | rna-NM_001181248.1_SA1 | cds-NP_011634.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:718637-720262:- | gene-YGR119C_ThermosaccDry | rna-NM_001181248.1_ThermosaccDry | cds-NP_011634.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:821066-822694:- | gene-YGR119C_VR1 | rna-NM_001181248.1_VR1 | cds-NP_011634.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:21029-22657:- | gene-YGR119C_ZTW1 | rna-NM_001181248.1_ZTW1 | cds-NP_011634.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:708490-710118:- | gene-YGR119C_Sparadoxus | rna-NM_001181248.1_Sparadoxus | cds-NP_011634.1_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |