Gene name: NUP53
Reference locus (S288C): YMR153W
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of nuclear pore complex (NPC); also part of the NPC nuclear basket; contributes directly to nucleocytoplasmic transport; involved in regulation of transcription and mitosis; induces membrane tubulation, which may contribute to nuclear pore assembly; NUP53 has a paralog, ASM4, that arose from the whole genome duplication
Top 10 interactors (score): PSE1 (0.999); NUP170 (0.999); ASM4 (0.999); NUP157 (0.998); NIC96 (0.995); NUP57 (0.99); NUP192 (0.99); NUP188 (0.99); POM34 (0.988); NUP2 (0.987); NUP116 (0.985); NUP1 (0.985); NUP159 (0.983); NUP49 (0.982); MLP2 (0.982); NUP145 (0.982); NUP60 (0.98); NUP42 (0.977); NUP100 (0.976); POM152 (0.961)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:603939-605366:+ | gene-YMR153W_AKU4011 | rna-NM_001182656.1_AKU4011 | cds-NP_013873.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:67176-68603:- | gene-YMR153W_BG1 | rna-NM_001182656.1_BG1 | cds-NP_013873.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:547107-548534:+ | gene-YMR153W_Bruggeman | rna-NM_001182656.1_Bruggeman | cds-NP_013873.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:549327-550754:+ | gene-YMR153W_CAT1 | rna-NM_001182656.1_CAT1 | cds-NP_013873.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:536863-538290:+ | gene-YMR153W_CBS1585 | rna-NM_001182656.1_CBS1585 | cds-NP_013873.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:540736-542163:+ | gene-YMR153W_CBS436 | rna-NM_001182656.1_CBS436 | cds-NP_013873.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:649481-650908:+ | gene-YMR153W_CBS6412 | rna-NM_001182656.1_CBS6412 | cds-NP_013873.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:535414-536841:+ | gene-YMR153W_CBS6413 | rna-NM_001182656.1_CBS6413 | cds-NP_013873.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:558945-560372:+ | gene-YMR153W_CENPK1137D | rna-NM_001182656.1_CENPK1137D | cds-NP_013873.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:535029-536456:+ | gene-YMR153W_EthanolRed | rna-NM_001182656.1_EthanolRed | cds-NP_013873.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:542028-543455:+ | gene-YMR153W_FaliES1 | rna-NM_001182656.1_FaliES1 | cds-NP_013873.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:13875-15302:+ | gene-YMR153W_JAY291 | rna-NM_001182656.1_JAY291 | cds-NP_013873.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:541832-543259:+ | gene-YMR153W_MUCL30387 | rna-NM_001182656.1_MUCL30387 | cds-NP_013873.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:547356-548783:+ | gene-YMR153W_MUCL30388 | rna-NM_001182656.1_MUCL30388 | cds-NP_013873.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:537550-538977:+ | gene-YMR153W_MUCL39482 | rna-NM_001182656.1_MUCL39482 | cds-NP_013873.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:543841-545268:+ | gene-YMR153W_MUCL42920 | rna-NM_001182656.1_MUCL42920 | cds-NP_013873.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:564389-565816:+ | gene-YMR153W_NCIM3186 | rna-NM_001182656.1_NCIM3186 | cds-NP_013873.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:537253-538680:+ | gene-YMR153W_NCYC1407 | rna-NM_001182656.1_NCYC1407 | cds-NP_013873.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:547629-549056:+ | gene-YMR153W_PE2H3 | rna-NM_001182656.1_PE2H3 | cds-NP_013873.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:548087-549514:+ | gene-YMR153W_PE2H4 | rna-NM_001182656.1_PE2H4 | cds-NP_013873.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:564435-565862:+ | gene-YMR153W_S288C | rna-NM_001182656.1_S288C | cds-NP_013873.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:5414-6841:- | gene-YMR153W_SA1 | rna-NM_001182656.1_SA1 | cds-NP_013873.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:537676-539103:+ | gene-YMR153W_ThermosaccDry | rna-NM_001182656.1_ThermosaccDry | cds-NP_013873.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:550142-551569:+ | gene-YMR153W_VR1 | rna-NM_001182656.1_VR1 | cds-NP_013873.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:512570-513997:+ | gene-YMR153W_ZTW1 | rna-NM_001182656.1_ZTW1 | cds-NP_013873.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:548973-550400:+ | gene-YMR153W_Sparadoxus | rna-NM_001182656.1_Sparadoxus | cds-NP_013873.1_Sparadoxus | 87.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |