Gene name: NUP49
Reference locus (S288C): YGL172W
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier; found in stable complex with Nic96p and two other FG-nucleoproteins (Nsp1p and Nup57p)
Top 10 interactors (score): NIC96 (0.999); NSP1 (0.999); NUP57 (0.999); NUP159 (0.995); NUP1 (0.992); NUP60 (0.991); NUP42 (0.99); NUP84 (0.985); NUP85 (0.984); NUP116 (0.984); NUP145 (0.983); ASM4 (0.983); NUP53 (0.982); NUP133 (0.981); NUP2 (0.981); NUP100 (0.978); NUP192 (0.977); GLE2 (0.974); NUP157 (0.972); KAP95 (0.971)
Homologues (species, bitscore): NUP98 (Homo sapiens, 65.5); Nup98 (Mus musculus, 67.4); nup98 (Danio rerio, 71.6); nup98 (Xenopus tropicalis, 52.0); Nup98-96 (Drosophila melanogaster, 57.8); npp-10 (Caenorhabditis elegans, 97.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:183274-184692:+ | gene-YGL172W_AKU4011 | rna-NM_001181037.1_AKU4011 | cds-NP_011343.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:225670-227088:- | gene-YGL172W_BG1 | rna-NM_001181037.1_BG1 | cds-NP_011343.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:185467-186885:+ | gene-YGL172W_Bruggeman | rna-NM_001181037.1_Bruggeman | cds-NP_011343.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:181337-182755:+ | gene-YGL172W_CAT1 | rna-NM_001181037.1_CAT1 | cds-NP_011343.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:186413-187831:+ | gene-YGL172W_CBS1585 | rna-NM_001181037.1_CBS1585 | cds-NP_011343.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:181327-182745:+ | gene-YGL172W_CBS436 | rna-NM_001181037.1_CBS436 | cds-NP_011343.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:172876-174294:+ | gene-YGL172W_CBS6412 | rna-NM_001181037.1_CBS6412 | cds-NP_011343.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:180725-182143:+ | gene-YGL172W_CBS6413 | rna-NM_001181037.1_CBS6413 | cds-NP_011343.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:180927-182345:+ | gene-YGL172W_CENPK1137D | rna-NM_001181037.1_CENPK1137D | cds-NP_011343.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:173081-174499:+ | gene-YGL172W_EthanolRed | rna-NM_001181037.1_EthanolRed | cds-NP_011343.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:174327-175745:+ | gene-YGL172W_FaliES1 | rna-NM_001181037.1_FaliES1 | cds-NP_011343.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:24561-25979:+ | gene-YGL172W_JAY291 | rna-NM_001181037.1_JAY291 | cds-NP_011343.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:182715-184133:+ | gene-YGL172W_MUCL30387 | rna-NM_001181037.1_MUCL30387 | cds-NP_011343.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:185805-187223:+ | gene-YGL172W_MUCL30388 | rna-NM_001181037.1_MUCL30388 | cds-NP_011343.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:183437-184855:+ | gene-YGL172W_MUCL39482 | rna-NM_001181037.1_MUCL39482 | cds-NP_011343.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:186022-187440:+ | gene-YGL172W_MUCL42920 | rna-NM_001181037.1_MUCL42920 | cds-NP_011343.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:180700-182118:+ | gene-YGL172W_NCIM3186 | rna-NM_001181037.1_NCIM3186 | cds-NP_011343.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:174901-176319:+ | gene-YGL172W_NCYC1407 | rna-NM_001181037.1_NCYC1407 | cds-NP_011343.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:176861-178279:+ | gene-YGL172W_PE2H3 | rna-NM_001181037.1_PE2H3 | cds-NP_011343.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:176409-177827:+ | gene-YGL172W_PE2H4 | rna-NM_001181037.1_PE2H4 | cds-NP_011343.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:180700-182118:+ | gene-YGL172W_S288C | rna-NM_001181037.1_S288C | cds-NP_011343.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000067.1:40519-41937:+ | gene-YGL172W_SA1 | rna-NM_001181037.1_SA1 | cds-NP_011343.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:174556-175974:+ | gene-YGL172W_ThermosaccDry | rna-NM_001181037.1_ThermosaccDry | cds-NP_011343.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:181763-183181:+ | gene-YGL172W_VR1 | rna-NM_001181037.1_VR1 | cds-NP_011343.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:173006-174425:+ | gene-YGL172W_ZTW1 | rna-NM_001181037.1_ZTW1 | cds-NP_011343.1_ZTW1 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:179843-181234:+ | gene-YGL172W_Sparadoxus | rna-NM_001181037.1_Sparadoxus | cds-NP_011343.1_Sparadoxus | 88.1 | 97.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |