Gene name: NUP42
Reference locus (S288C): YDR192C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; also part of the nuclear pore complex (NPC) cytoplasmic filaments; contributes directly to nucleocytoplasmic transport and maintenance of the NPC permeability barrier and is involved in gene tethering at the nuclear periphery; interacts with Gle1p
Top 10 interactors (score): GLE1 (0.999); NUP57 (0.999); DBP5 (0.998); NUP116 (0.997); NUP2 (0.996); ASM4 (0.996); GLE2 (0.996); NUP100 (0.995); NSP1 (0.995); NUP145 (0.991); NUP60 (0.991); NUP49 (0.99); NUP1 (0.989); NUP82 (0.984); NUP159 (0.978); NUP53 (0.977); NUP84 (0.974); POM34 (0.958); KAP95 (0.956); NIC96 (0.951)
Homologues (species, bitscore): MCM3AP (Homo sapiens, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:812100-813392:- | gene-YDR192C_AKU4011 | rna-NM_001180500.3_AKU4011 | cds-NP_010478.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:312424-313716:+ | gene-YDR192C_BG1 | rna-NM_001180500.3_BG1 | cds-NP_010478.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:844511-845803:- | gene-YDR192C_Bruggeman | rna-NM_001180500.3_Bruggeman | cds-NP_010478.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:831783-833075:- | gene-YDR192C_CAT1 | rna-NM_001180500.3_CAT1 | cds-NP_010478.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:802460-803752:- | gene-YDR192C_CBS1585 | rna-NM_001180500.3_CBS1585 | cds-NP_010478.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:831468-832760:- | gene-YDR192C_CBS436 | rna-NM_001180500.3_CBS436 | cds-NP_010478.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:799267-800559:- | gene-YDR192C_CBS6412 | rna-NM_001180500.3_CBS6412 | cds-NP_010478.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:829811-831103:- | gene-YDR192C_CBS6413 | rna-NM_001180500.3_CBS6413 | cds-NP_010478.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:842401-843693:- | gene-YDR192C_CENPK1137D | rna-NM_001180500.3_CENPK1137D | cds-NP_010478.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:812852-814144:- | gene-YDR192C_EthanolRed | rna-NM_001180500.3_EthanolRed | cds-NP_010478.3_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:821064-822356:- | gene-YDR192C_FaliES1 | rna-NM_001180500.3_FaliES1 | cds-NP_010478.3_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:26994-28286:+ | gene-YDR192C_JAY291 | rna-NM_001180500.3_JAY291 | cds-NP_010478.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:830164-831456:- | gene-YDR192C_MUCL30387 | rna-NM_001180500.3_MUCL30387 | cds-NP_010478.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:818413-819705:- | gene-YDR192C_MUCL30388 | rna-NM_001180500.3_MUCL30388 | cds-NP_010478.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:803907-805199:- | gene-YDR192C_MUCL39482 | rna-NM_001180500.3_MUCL39482 | cds-NP_010478.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:742607-743899:- | gene-YDR192C_MUCL42920 | rna-NM_001180500.3_MUCL42920 | cds-NP_010478.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:843492-844784:- | gene-YDR192C_NCIM3186 | rna-NM_001180500.3_NCIM3186 | cds-NP_010478.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:807041-808333:- | gene-YDR192C_NCYC1407 | rna-NM_001180500.3_NCYC1407 | cds-NP_010478.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:823791-825083:- | gene-YDR192C_PE2H3 | rna-NM_001180500.3_PE2H3 | cds-NP_010478.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:823096-824388:- | gene-YDR192C_PE2H4 | rna-NM_001180500.3_PE2H4 | cds-NP_010478.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:843569-844861:- | gene-YDR192C_S288C | rna-NM_001180500.3_S288C | cds-NP_010478.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:189275-190567:- | gene-YDR192C_SA1 | rna-NM_001180500.3_SA1 | cds-NP_010478.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:819219-820511:- | gene-YDR192C_ThermosaccDry | rna-NM_001180500.3_ThermosaccDry | cds-NP_010478.3_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:834446-835738:- | gene-YDR192C_VR1 | rna-NM_001180500.3_VR1 | cds-NP_010478.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:81938-83230:- | gene-YDR192C_ZTW1 | rna-NM_001180500.3_ZTW1 | cds-NP_010478.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:824175-825467:- | gene-YDR192C_Sparadoxus | rna-NM_001180500.3_Sparadoxus | cds-NP_010478.3_Sparadoxus | 84.0 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |