Gene name: NUP2
Reference locus (S288C): YLR335W
Gene biotype: protein_coding
Description: Nucleoporin involved in nucleocytoplasmic transport; binds to either the nucleoplasmic or cytoplasmic faces of the nuclear pore complex depending on Ran-GTP levels; also has a role in chromatin organization
Top 10 interactors (score): GSP1 (0.999); KAP95 (0.999); MLP2 (0.999); NUP159 (0.999); NUP57 (0.999); NUP60 (0.999); GSP2 (0.999); MEX67 (0.999); SMT3 (0.999); SRP1 (0.999); NIC96 (0.998); NSP1 (0.998); NTF2 (0.997); NUP170 (0.997); NUP116 (0.997); UBC9 (0.997); NUP84 (0.997); MLP1 (0.996); NUP42 (0.996); GLE1 (0.995)
Homologues (species, bitscore): RANBP2 (Homo sapiens, 80.1); Ranbp2 (Mus musculus, 74.7); PPIA (Danio rerio, 70.5); ranbp2 (Xenopus tropicalis, 69.3); Nup358 (Drosophila melanogaster, 70.1); npp-9 (Caenorhabditis elegans, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:746954-749116:+ | gene-YLR335W_AKU4011 | rna-NM_001182224.1_AKU4011 | cds-NP_013439.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:13520-15682:+ | gene-YLR335W_BG1 | rna-NM_001182224.1_BG1 | cds-NP_013439.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:783302-785464:+ | gene-YLR335W_Bruggeman | rna-NM_001182224.1_Bruggeman | cds-NP_013439.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:780261-782423:+ | gene-YLR335W_CAT1 | rna-NM_001182224.1_CAT1 | cds-NP_013439.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:782007-784169:+ | gene-YLR335W_CBS1585 | rna-NM_001182224.1_CBS1585 | cds-NP_013439.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:765317-767479:+ | gene-YLR335W_CBS436 | rna-NM_001182224.1_CBS436 | cds-NP_013439.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:818998-821160:+ | gene-YLR335W_CBS6412 | rna-NM_001182224.1_CBS6412 | cds-NP_013439.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:782868-785030:+ | gene-YLR335W_CBS6413 | rna-NM_001182224.1_CBS6413 | cds-NP_013439.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:782047-784209:+ | gene-YLR335W_CENPK1137D | rna-NM_001182224.1_CENPK1137D | cds-NP_013439.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:739172-741334:+ | gene-YLR335W_EthanolRed | rna-NM_001182224.1_EthanolRed | cds-NP_013439.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:768373-770535:+ | gene-YLR335W_FaliES1 | rna-NM_001182224.1_FaliES1 | cds-NP_013439.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000315.1:18690-20852:- | gene-YLR335W_JAY291 | rna-NM_001182224.1_JAY291 | cds-NP_013439.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:781755-783917:+ | gene-YLR335W_MUCL30387 | rna-NM_001182224.1_MUCL30387 | cds-NP_013439.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:787101-789263:+ | gene-YLR335W_MUCL30388 | rna-NM_001182224.1_MUCL30388 | cds-NP_013439.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:783226-785388:+ | gene-YLR335W_MUCL39482 | rna-NM_001182224.1_MUCL39482 | cds-NP_013439.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:778502-780664:+ | gene-YLR335W_MUCL42920 | rna-NM_001182224.1_MUCL42920 | cds-NP_013439.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:797404-799566:+ | gene-YLR335W_NCIM3186 | rna-NM_001182224.1_NCIM3186 | cds-NP_013439.1_NCIM3186 | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:792446-794608:+ | gene-YLR335W_NCYC1407 | rna-NM_001182224.1_NCYC1407 | cds-NP_013439.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:779080-781242:+ | gene-YLR335W_PE2H3 | rna-NM_001182224.1_PE2H3 | cds-NP_013439.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:778824-780986:+ | gene-YLR335W_PE2H4 | rna-NM_001182224.1_PE2H4 | cds-NP_013439.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:797430-799592:+ | gene-YLR335W_S288C | rna-NM_001182224.1_S288C | cds-NP_013439.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:249376-251538:- | gene-YLR335W_SA1 | rna-NM_001182224.1_SA1 | cds-NP_013439.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:770265-772427:+ | gene-YLR335W_ThermosaccDry | rna-NM_001182224.1_ThermosaccDry | cds-NP_013439.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:783322-785484:+ | gene-YLR335W_VR1 | rna-NM_001182224.1_VR1 | cds-NP_013439.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:108654-110816:+ | gene-YLR335W_ZTW1 | rna-NM_001182224.1_ZTW1 | cds-NP_013439.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:756636-758801:+ | gene-YLR335W_Sparadoxus | rna-NM_001182224.1_Sparadoxus | cds-NP_013439.1_Sparadoxus | 85.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |