NUP2 (YLR335W)


Gene profile

Gene name: NUP2
Reference locus (S288C): YLR335W
Gene biotype: protein_coding

Description: Nucleoporin involved in nucleocytoplasmic transport; binds to either the nucleoplasmic or cytoplasmic faces of the nuclear pore complex depending on Ran-GTP levels; also has a role in chromatin organization

Top 10 interactors (score): GSP1 (0.999); KAP95 (0.999); MLP2 (0.999); NUP159 (0.999); NUP57 (0.999); NUP60 (0.999); GSP2 (0.999); MEX67 (0.999); SMT3 (0.999); SRP1 (0.999); NIC96 (0.998); NSP1 (0.998); NTF2 (0.997); NUP170 (0.997); NUP116 (0.997); UBC9 (0.997); NUP84 (0.997); MLP1 (0.996); NUP42 (0.996); GLE1 (0.995)

Homologues (species, bitscore): RANBP2 (Homo sapiens, 80.1); Ranbp2 (Mus musculus, 74.7); PPIA (Danio rerio, 70.5); ranbp2 (Xenopus tropicalis, 69.3); Nup358 (Drosophila melanogaster, 70.1); npp-9 (Caenorhabditis elegans, 58.9)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:746954-749116:+ gene-YLR335W_AKU4011 rna-NM_001182224.1_AKU4011 cds-NP_013439.1_AKU4011 99.9 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:13520-15682:+ gene-YLR335W_BG1 rna-NM_001182224.1_BG1 cds-NP_013439.1_BG1 99.1 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:783302-785464:+ gene-YLR335W_Bruggeman rna-NM_001182224.1_Bruggeman cds-NP_013439.1_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:780261-782423:+ gene-YLR335W_CAT1 rna-NM_001182224.1_CAT1 cds-NP_013439.1_CAT1 99.1 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:782007-784169:+ gene-YLR335W_CBS1585 rna-NM_001182224.1_CBS1585 cds-NP_013439.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:765317-767479:+ gene-YLR335W_CBS436 rna-NM_001182224.1_CBS436 cds-NP_013439.1_CBS436 99.1 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:818998-821160:+ gene-YLR335W_CBS6412 rna-NM_001182224.1_CBS6412 cds-NP_013439.1_CBS6412 99.9 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:782868-785030:+ gene-YLR335W_CBS6413 rna-NM_001182224.1_CBS6413 cds-NP_013439.1_CBS6413 99.9 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:782047-784209:+ gene-YLR335W_CENPK1137D rna-NM_001182224.1_CENPK1137D cds-NP_013439.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:739172-741334:+ gene-YLR335W_EthanolRed rna-NM_001182224.1_EthanolRed cds-NP_013439.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:768373-770535:+ gene-YLR335W_FaliES1 rna-NM_001182224.1_FaliES1 cds-NP_013439.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000315.1:18690-20852:- gene-YLR335W_JAY291 rna-NM_001182224.1_JAY291 cds-NP_013439.1_JAY291 99.1 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:781755-783917:+ gene-YLR335W_MUCL30387 rna-NM_001182224.1_MUCL30387 cds-NP_013439.1_MUCL30387 99.4 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:787101-789263:+ gene-YLR335W_MUCL30388 rna-NM_001182224.1_MUCL30388 cds-NP_013439.1_MUCL30388 99.4 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:783226-785388:+ gene-YLR335W_MUCL39482 rna-NM_001182224.1_MUCL39482 cds-NP_013439.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:778502-780664:+ gene-YLR335W_MUCL42920 rna-NM_001182224.1_MUCL42920 cds-NP_013439.1_MUCL42920 99.4 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:797404-799566:+ gene-YLR335W_NCIM3186 rna-NM_001182224.1_NCIM3186 cds-NP_013439.1_NCIM3186 90.8 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:792446-794608:+ gene-YLR335W_NCYC1407 rna-NM_001182224.1_NCYC1407 cds-NP_013439.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:779080-781242:+ gene-YLR335W_PE2H3 rna-NM_001182224.1_PE2H3 cds-NP_013439.1_PE2H3 99.1 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:778824-780986:+ gene-YLR335W_PE2H4 rna-NM_001182224.1_PE2H4 cds-NP_013439.1_PE2H4 99.1 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:797430-799592:+ gene-YLR335W_S288C rna-NM_001182224.1_S288C cds-NP_013439.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000007.1:249376-251538:- gene-YLR335W_SA1 rna-NM_001182224.1_SA1 cds-NP_013439.1_SA1 99.1 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:770265-772427:+ gene-YLR335W_ThermosaccDry rna-NM_001182224.1_ThermosaccDry cds-NP_013439.1_ThermosaccDry 99.9 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:783322-785484:+ gene-YLR335W_VR1 rna-NM_001182224.1_VR1 cds-NP_013439.1_VR1 99.1 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000025.1:108654-110816:+ gene-YLR335W_ZTW1 rna-NM_001182224.1_ZTW1 cds-NP_013439.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:756636-758801:+ gene-YLR335W_Sparadoxus rna-NM_001182224.1_Sparadoxus cds-NP_013439.1_Sparadoxus 85.3 99.7 Verified 1 1 0 False False False True False

Additional files